Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008543: Burkholderia cenocepacia HI2424 chromosome 2, complete sequence

NCBI: NC_008543

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1610008061919620Island text1.5543818.217418.515Neighbours11BLASTN+IslandViewer 61000.gbk
29031211009919788Island text1.6525916.643416.3824Neighbours11BLASTN+IslandViewer 90312.gbk
312767515311825444Island text1.6318316.184114.4817Neighbours11BLASTN+IslandViewer 127675.gbk
425945028288823439Island text1.473117.345618.2544Neighbours11BLASTN+259450.gbk
532377334709923327Island text1.9123722.622323.4632Neighbours11BLASTNIslandViewer 323773.gbk
658212961104528917Island text2.9192733.409124.1419Neighbours11BLASTN+IslandViewer 582129.gbk
72035292205318117890Island text1.4911318.482519.7223Neighbours11BLASTN+IslandViewer 2035292.gbk
82220698226060739910Island text2.1727625.349723.3197Neighbours11BLASTN+IslandViewer 2220698.gbk
92474002249449920498Island text1.5539517.919117.9945Neighbours11BLASTNIslandViewer 2474002.gbk
102666846268814221297Island text1.7727417.265820.4082Neighbours11BLASTN+IslandViewer 2666846.gbk
112696377*272466728291Island text2.1841526.634122.4149Neighbours11BLASTN+IslandViewer 2696377.gbk
122871747290125029504Island text1.8865724.683914.8947Neighbours11BLASTN+IslandViewer 2871747.gbk