Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007005: Pseudomonas syringae pv. syringae B728a, complete genome

NCBI: NC_007005

Host Lineage: Pseudomonas syringae; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain is the causal agent of brown spot disease on beans. It was isolated from a snap bean leaflet in Wisconsin, USA. Plant pathogen. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
198488*13693138444Island text2.5780835.152628.0307Neighbours11BLASTN+IslandViewer 98488.gbk
232169534130519611Island text1.5414523.774937.0873Neighbours11BLASTN+IslandViewer 321695.gbk
3830467*85407423608Island text1.8020924.445833.8569Neighbours11BLASTN+IslandViewer 830467.gbk
41036243106363927397Island text1.6675325.047434.6036Neighbours11BLASTN+1036243.gbk
51415962143723321272Island text1.51923.627225.2741Neighbours11BLASTNIslandViewer 1415962.gbk
61605000162491619917Island text1.6127924.761232.4533Neighbours11BLASTN+IslandViewer 1605000.gbk
71636875167981442940Island text2.1441931.345831.9535Neighbours11BLASTN+IslandViewer 1636875.gbk
81705406172883623431Island text1.5043429.529536.9173Neighbours11BLASTNIslandViewer PAI DB1705406.gbk
91738500*176475226253Island text2.7693633.676845.2292Neighbours11BLASTNIslandViewer 1738500.gbk
102149275*217042621152Island text1.6528123.636128.2678Neighbours11BLASTN+2149275.gbk
112191500*223078139282Island text2.6723733.655741.5717Neighbours11BLASTNIslandViewer 2191500.gbk
122686551*274062754077Island text2.2812333.813436.0913Neighbours11BLASTN+IslandViewer 2686551.gbk
133199820323980239983Island text1.8444428.780724.9431Neighbours11BLASTN+IslandViewer 3199820.gbk
143414579*344125226674Island text1.5269726.231236.0976Neighbours11BLASTN+IslandViewer 3414579.gbk
153684099*370898924891Island text2.2452932.641849.4171Neighbours11BLASTN+IslandViewer 3684099.gbk
164062311408347221162Island text1.5522825.332940.1434Neighbours11BLASTN+4062311.gbk
174411388444643035043Island text1.6780827.160321.3912Neighbours11BLASTN+IslandViewer 4411388.gbk
184515853454582229970Island text3.0025637.521428.2002Neighbours11BLASTN+IslandViewer 4515853.gbk
194810295483667726383Island text1.5724724.677844.9994Neighbours11BLASTN+4810295.gbk
204857768488033522568Island text1.5081123.081845.9008Neighbours11BLASTN4857768.gbk
214992730502132828599Island text1.8196730.335738.6733Neighbours11BLASTN+IslandViewer 4992730.gbk
225127414515430626893Island text1.7162127.0433.0125Neighbours11BLASTNIslandViewer 5127414.gbk
235154317518283828522Island text2.0027933.335931.8567Neighbours11BLASTNIslandViewer 5154317.gbk
245367454*539426326810Island text2.7460735.958227.7472Neighbours11BLASTN+IslandViewer 5367454.gbk
255500196*552713626941Island text1.6041825.203521.1113Neighbours11BLASTN+IslandViewer 5500196.gbk
265825925584413718213Island text1.5233622.984635.4063Neighbours11BLASTN+5825925.gbk
275882205592100338799Island text1.760628.163432.115Neighbours11BLASTNIslandViewer PAI DB5882205.gbk
286056765608605229288Island text1.9775728.690932.0876Neighbours11BLASTNIslandViewer 6056765.gbk