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Query: NC_015571:722815 Porphyromonas gingivalis TDC60, complete genome

Start: 722815, End: 745817, Length: 23003

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin. Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015571:2002489*2002489204114838660Porphyromonas gingivalis TDC60, complete genome3e-123450BLASTN svgBLASTP svg
NC_010729:20381182038118205650218385Porphyromonas gingivalis ATCC 33277, complete genome3e-123450BLASTN svgBLASTP svg
NC_010729:225616*22561624523819623Porphyromonas gingivalis ATCC 33277, complete genome4e-42180BLASTN svgBLASTP svg
NC_015571:41115641115643280321648Porphyromonas gingivalis TDC60, complete genome1e-36163BLASTN svgBLASTP svg
NC_003228:3645426*3645426366444019015Bacteroides fragilis NCTC 9343, complete genome1e-29139BLASTN svgBLASTP svg
NC_006347:3735887*3735887375870822822Bacteroides fragilis YCH46, complete genome4e-27131BLASTN svgBLASTP svg
NC_002950:115917*11591713603020114Porphyromonas gingivalis W83, complete genome9e-25123BLASTN svgBLASTP svg
NC_015164:34312793431279345941528137Bacteroides salanitronis DSM 18170 chromosome, complete genome8e-19103BLASTN svgBLASTP svg
NC_002950:353549*35354937859925051Porphyromonas gingivalis W83, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015571:1495286*1495286151559920314Porphyromonas gingivalis TDC60, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013850:4612812*4612812463649923688Klebsiella variicola At-22 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009648:838000*83800086209024091Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010729:13852171385217140844823232Porphyromonas gingivalis ATCC 33277, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002950:19811551981155200431123157Porphyromonas gingivalis W83, complete genome7e-0763.9BLASTN svgBLASTP svg