Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2967296 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2967296, End: 2967556, Length: 261

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:3027161:305470130547013054961261Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system secretory apparatus2e-34144
NC_003197:3005842:303338530333853033645261Salmonella typhimurium LT2, complete genomeneedle complex export protein2e-34144
NC_003198:2856596:288538528853852885645261Salmonella enterica subsp. enterica serovar Typhi str. CT18,secretory protein (associated with virulence)2e-34144
NC_006511:2819128:284792128479212848181261Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCsecretory protein (associated with virulence)2e-34144
NC_010102:2967464:299636729963672996627261Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-34144
NC_011149:2912219:294191129419112942171261Salmonella enterica subsp. enterica serovar Agona str. SL483,EpaQ2e-34144
NC_011080:2982346:300988930098893010149261Salmonella enterica subsp. enterica serovar Newport str. SL254,EpaQ2e-34144
NC_011094:2913500:294058129405812940841261Salmonella enterica subsp. enterica serovar Schwarzengrund strprotein EpaQ2e-34144
NC_011147:2814664:284345728434572843717261Salmonella enterica subsp. enterica serovar Paratyphi A strvirulence secretory protein2e-34144
NC_011294:2890500:291804529180452918305261Salmonella enterica subsp. enterica serovar Enteritidis strsecretory protein2e-34144
NC_016863:2974333:300187530018753002135261Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex export protein2e-34144
NC_016860:3029272:305681530568153057075261Salmonella enterica subsp. enterica serovar Typhimurium strprotein EpaQ2e-34144
NC_016857:3028421:305596130559613056221261Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Surface presentation of antigens protein SpaQ2e-34144
NC_016856:3026426:305362230536223053882261Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex export protein2e-34144
NC_016831:2867766:289530928953092895569261Salmonella enterica subsp. enterica serovar Gallinarum/pullorumsecretory protein (associated with virulence)2e-34144
NC_016810:3028421:305596130559613056221261Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system secretory apparatus2e-34144
NC_015761:2726000:275298427529842753244261Salmonella bongori NCTC 12419, complete genomevirulence associated secretory protein3e-34143
NC_002695:3702344:372473437247343724994261Escherichia coli O157:H7 str. Sakai, complete genomeEpaQ4e-24109
NC_009800:2995958:302141430214143021674261Escherichia coli HS, complete genometype III secretion apparatus protein EpaQ4e-24109
NC_010468:906957:917351917351917611261Escherichia coli ATCC 8739, complete genometype III secretion protein, HrpO family4e-24109
NC_002655:3769643:379203937920393792299261Escherichia coli O157:H7 EDL933, complete genometype III secretion apparatus protein4e-24109
CU928160:3030324:305339230533923053652261Escherichia coli IAI1 chromosome, complete genomefragment of surface presentation of antigens protein (partial)4e-24109
NC_009801:3175714:319877831987783199038261Escherichia coli E24377A, complete genometype III secretion apparatus protein EpaQ4e-24109
NC_011353:3805819:382913138291313829391261Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus protein EpaQ4e-24109
NC_011741:3030324:305339230533923053652261Escherichia coli IAI1 chromosome, complete genome4e-24109
NC_013008:3761467:378385737838573784117261Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype III secretion apparatus protein4e-24109
NC_013361:3867558:389062538906253890885261Escherichia coli O26:H11 str. 11368 chromosome, complete genometype III secretion protein EpaQ4e-24109
NC_013364:3552284:357535635753563575616261Escherichia coli O111:H- str. 11128, complete genometype III secretion protein EpaQ4e-24109
NC_011748:3196173:321927732192773219537261Escherichia coli 55989, complete genome1e-23108
CU928145:3196173:321927732192773219537261Escherichia coli 55989 chromosome, complete genomefragment of surface presentation of antigens protein (partial)1e-23108
AP010958:3474077:349714334971433497403261Escherichia coli O103:H2 str. 12009 DNA, complete genometype III secretion protein EpaQ8e-24108
NC_013353:3474077:349714334971433497403261Escherichia coli O103:H2 str. 12009, complete genometype III secretion protein EpaQ8e-24108
NC_011751:3285646:330896133089613309308348Escherichia coli UMN026 chromosome, complete genomesurface presentation of antigens protein7e-24108
CP002516:903241:913631913631913890260Escherichia coli KO11, complete genome1e-1788.2
NC_011415:3217796:324093732409373241122186Escherichia coli SE11 chromosome, complete genomeputative type III secretion protein3e-1787.4
CP002185:3167738:319226031922603192445186Escherichia coli W, complete genome3e-1787.4
NC_020418:14965:282832828328549267Morganella morganii subsp. morganii KT, complete genomeType III secretion inner membrane protein3e-1683.6
NC_010694:2971170:299164129916412991895255Erwinia tasmaniensis, complete genomeType III secretion apparatus8e-1475.9
NC_013971:2876733:289777628977762898030255Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein4e-1373.6
NC_013961:851044:873270873270873524255Erwinia amylovora, complete genomeSurface presentation of antigens protein spaQ4e-1373.6
NC_013722:1689125:172473117247311724997267Xanthomonas albilineans, complete genomeprobable xanthomonas secretion apparatus protein2e-1271.2
NC_013971:1660144:168582116858211686075255Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein3e-1270.9
NC_013961:1622616:164829316482931648547255Erwinia amylovora, complete genomeSurface presentation of antigens protein spaQ3e-1270.9
NC_012214:2221702:224257922425792242833255Erwinia pyrifoliae Ep1/96, complete genomeType III secretion apparatus7e-1269.3
NC_008011:663958:668846668846669106261Lawsonia intracellularis PHE/MN1-00, complete genomeprobable translocation protein in type III secretion9e-1062.4
NC_007645:3343815:335881133588113359080270Hahella chejuensis KCTC 2396, complete genomeType III secretory pathway, component EscS3e-0753.9
NC_012962:1189021:119535111953511195617267Photorhabdus asymbiotica, complete genometype iii secretion component protein scts4e-0753.5
NC_005126:4423964:443890444389044439170267Photorhabdus luminescens subsp. laumondii TTO1, complete genomeType III secretion component protein SctS1e-0651.6
NC_013223:685628:707354707354707629276Desulfohalobium retbaense DSM 5692, complete genomeflagellar biosynthetic protein FliQ5e-0649.7