Pre_GI: BLASTP Hits

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Query: NC_010498:3838419:3866306 Escherichia coli SMS-3-5, complete genome

Start: 3866306, End: 3866836, Length: 531

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli SMS-3-5 was isolated from a toxic-metal contaminated site, Shipyard Creek, Charleston, South Carolina, USA. This strain is highly resistant to a number of antibiotics. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011415:3887997:389982538998253900355531Escherichia coli SE11 chromosome, complete genomeputative transcriptional regulator1e-96351
NC_010468:231000:239442239442239972531Escherichia coli ATCC 8739, complete genometranscriptional regulator, LuxR family2e-96350
CU928160:3709081:371866837186683719198531Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator2e-96350
NC_009801:3956917:396649439664943967024531Escherichia coli E24377A, complete genometranscriptional regulator DctR2e-96350
NC_011748:3983432:401979140197914020321531Escherichia coli 55989, complete genomeputative DNA-binding transcriptional regulator2e-96350
AP010958:4313462:432189343218934322423531Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-96350
CP002185:3822470:385046238504623850992531Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator2e-96350
CU928145:3983432:401979140197914020321531Escherichia coli 55989 chromosome, complete genomeputative DNA-binding transcriptional regulator2e-96350
CP002516:246767:255081255081255611531Escherichia coli KO11, complete genomeregulatory protein LuxR2e-96350
AC_000091:3976888:398520239852023985732531Escherichia coli W3110 DNA, complete genomepredicted DNA-binding ranscriptional regulator2e-96350
NC_000913:3624826:365270636527063653236531Escherichia coli K12, complete genomepredicted DNA-binding ranscriptional regulator2e-96350
NC_010473:3722571:375045137504513750981531Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding ranscriptional regulator2e-96350
NC_009800:3685651:369599436959943696524531Escherichia coli HS, complete genometranscriptional regulator DctR2e-96350
NC_011741:3709081:371866837186683719198531Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator2e-96350
NC_012759:3529657:354120035412003541730531Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding ranscriptional regulator2e-96350
NC_012947:248000:256472256472257002531Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLuxR family transcriptional regulator2e-96350
NC_017328:3655876:366659736665973667127531Shigella flexneri 2002017 chromosome, complete genomeHTH-type transcriptional regulator dctR2e-96350
NC_016822:3946500:395872139587213959251531Shigella sonnei 53G, complete genomeputative DNA-binding transcriptional regulator2e-96350
NC_013364:4306000:431417243141724314702531Escherichia coli O111:H- str. 11128, complete genomeputative DNA-binding transcriptional regulator2e-96350
NC_013361:4566779:457545245754524575982531Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator2e-96350
NC_004741:4132056:414157741415774142107531Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-96350
NC_007384:3741708:375002237500223750552531Shigella sonnei Ss046, complete genomehypothetical protein2e-96350
NC_004337:3621985:363174136317413632271531Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-96350
NC_004337:3590323:363174136317413632271531Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-96350
NC_008258:3581583:359200235920023592532531Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-96350
NC_016902:246767:255081255081255611531Escherichia coli KO11FL chromosome, complete genomeregulatory protein LuxR2e-96350
NC_013353:4313462:432189343218934322423531Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional regulator2e-96350
NC_012967:3549880:358417435841743584704531Escherichia coli B str. REL606 chromosome, complete genomeputative DNA-binding ranscriptional regulator2e-96350
NC_007613:3470314:350024935002493500779531Shigella boydii Sb227, complete genomehypothetical protein3e-95347
NC_010658:3622610:363248636324863633016531Shigella boydii CDC 3083-94, complete genometranscriptional regulator DctR3e-95347
NC_010473:3722571:375413437541343754661528Escherichia coli str. K-12 substr. DH10B, complete genomeacid-induced positive regulator of glutamate-dependent acid resistance4e-1167.8
NC_009800:3685651:369967736996773700204528Escherichia coli HS, complete genometranscriptional regulator GadE4e-1167.8
AC_000091:3976888:398152239815223982049528Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional activator4e-1167.8
NC_008258:3581583:359568435956843596211528Shigella flexneri 5 str. 8401, complete genomehypothetical protein4e-1167.8
NC_000913:3624826:365638936563893656916528Escherichia coli K12, complete genomeDNA-binding transcriptional activator4e-1167.8
CP002185:3822470:385414538541453854672528Escherichia coli W, complete genomeDNA-binding transcriptional activator4e-1167.8
CP002516:246767:251401251401251928528Escherichia coli KO11, complete genomehypothetical protein4e-1167.8
NC_011748:3983432:402347440234744024001528Escherichia coli 55989, complete genomeDNA-binding transcriptional activator4e-1167.8
CU928160:3709081:372235137223513722878528Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator4e-1167.8
NC_004337:3590323:363542336354233635950528Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-1167.8
NC_004337:3621985:363542336354233635950528Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-1167.8
AP010958:4313462:432557643255764326103528Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional activator GadE4e-1167.8
CU928145:3983432:402347440234744024001528Escherichia coli 55989 chromosome, complete genomeDNA-binding transcriptional activator4e-1167.8
NC_007384:3741708:374634237463423746869528Shigella sonnei Ss046, complete genomehypothetical protein4e-1167.8
NC_009801:3956917:397017739701773970704528Escherichia coli E24377A, complete genometranscriptional regulator GadE4e-1167.8
NC_017328:3655876:367027936702793670806528Shigella flexneri 2002017 chromosome, complete genomeTranscriptional regulator gadE4e-1167.8
NC_016902:246767:251401251401251928528Escherichia coli KO11FL chromosome, complete genomehypothetical protein4e-1167.8
NC_016822:3946500:396240439624043962931528Shigella sonnei 53G, complete genomeDNA-binding transcriptional activator4e-1167.8
NC_013364:4306000:431785543178554318382528Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional activator GadE4e-1167.8
NC_013361:4566779:457913545791354579662528Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional activator GadE4e-1167.8
NC_013353:4313462:432557643255764326103528Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional activator GadE4e-1167.8
NC_012967:3549880:358785735878573588384528Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional activator4e-1167.8
NC_012947:248000:252792252792253319528Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLuxR family transcriptional regulator4e-1167.8
NC_012759:3529657:354488335448833545410528Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional activator4e-1167.8
NC_011741:3709081:372235137223513722878528Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator4e-1167.8
NC_011415:3887997:390350839035083904035528Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-1167.8
NC_004741:4132056:413789841378984138425528Shigella flexneri 2a str. 2457T, complete genomehypothetical protein4e-1167.8
NC_010468:231000:235762235762236289528Escherichia coli ATCC 8739, complete genometranscriptional regulator, LuxR family4e-1167.8
NC_010658:3622610:363616936361693636696528Shigella boydii CDC 3083-94, complete genometranscriptional regulator GadE9e-1166.2
NC_007613:3470314:350393235039323504459528Shigella boydii Sb227, complete genomehypothetical protein9e-1166.2