Pre_GI: BLASTP Hits

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Query: NC_009089:117980:154769 Clostridium difficile 630, complete genome

Start: 154769, End: 155950, Length: 1182

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:120759:1503481503481514601113Clostridium difficile R20291, complete genomehypothetical protein0681
NC_009922:2590317:2592158259215825933781221Alkaliphilus oremlandii OhILAs, complete genomeYbbR family protein7e-29128
NC_014614:554949:5763795763795775811203Clostridium sticklandii, complete genomeexported protein of unknown function4e-26119
NC_008261:2920999:2931833293183329331581326Clostridium perfringens ATCC 13124, complete genomehypothetical protein3e-1996.7
NC_015555:386000:3917193917193929091191Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeYbbR family protein4e-1789.4
NC_013171:416279:419380419380420315936Anaerococcus prevotii DSM 20548, complete genomeYbbR family protein8e-1788.6
NC_010718:237962:2497572497572510041248Natranaerobius thermophilus JW/NM-WN-LF, complete genomeYbbR family protein2e-1584.3
NC_014328:4387303:4400678440067844019341257Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein7e-1582
NC_012563:3921859:3938227393822739395071281Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein2e-1480.5
NC_009697:3629250:3646312364631236475921281Clostridium botulinum A str. ATCC 19397 chromosome, completehypothetical protein8e-1478.6
NC_009698:3526359:3543421354342135447011281Clostridium botulinum A str. Hall chromosome, complete genomehypothetical protein8e-1478.6
NC_017297:3752000:3771769377176937730491281Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein1e-1377.8
NC_009699:3753599:3773155377315537744351281Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein1e-1377.8
NC_010516:3724312:3741376374137637426561281Clostridium botulinum B1 str. Okra, complete genomehypothetical protein1e-1377.8
NC_010520:3753875:3770890377089037721701281Clostridium botulinum A3 str. Loch Maree, complete genomehypothetical protein2e-1377
NC_012658:3744000:3761239376123937625191281Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein4e-1376.3
NC_014538:1942500:1955883195588319570731191Thermoanaerobacter sp. X513 chromosome, complete genomeYbbR family protein5e-1272.4
NC_015958:2206032:2236447223644722376371191Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeYbbR family protein2e-1170.9
NC_003869:2099000:2115893211589321170951203Thermoanaerobacter tengcongensis MB4, complete genomehypothetical protein4e-1169.7
NC_012034:390273:4150934150934163251233Anaerocellum thermophilum DSM 6725, complete genomeYbbR family protein7e-1065.5
NC_021184:592501:596835596835597788954Desulfotomaculum gibsoniae DSM 7213, complete genomehypothetical protein2e-0654.3