Pre_GI: BLASTP Hits

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Query: NC_008262:2649289:2651194 Clostridium perfringens SM101, complete genome

Start: 2651194, End: 2651421, Length: 228

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010520:1427981:143052914305291430756228Clostridium botulinum A3 str. Loch Maree, complete genomerubredoxin3e-22103
NC_012563:1464000:146607714660771466304228Clostridium botulinum A2 str. Kyoto, complete genomeglutaredoxin-like protein, YruB-family1e-21101
NC_010516:1382000:138397713839771384204228Clostridium botulinum B1 str. Okra, complete genomerubredoxin1e-21101
NC_009495:1368000:136826913682691368496228Clostridium botulinum A str. ATCC 3502 chromosome, complete genomerubredoxin1e-21101
NC_009697:1336889:133688913368891337116228Clostridium botulinum A str. ATCC 19397 chromosome, completerubredoxin1e-21101
NC_009698:1337383:133738313373831337610228Clostridium botulinum A str. Hall chromosome, complete genomerubredoxin1e-21101
NC_009699:1400000:140179814017981402025228Clostridium botulinum F str. Langeland chromosome, complete genomerubredoxin1e-21101
NC_014206:1497942:151771015177101517955246Geobacillus sp. C56-T3 chromosome, complete genomeglutaredoxin-like protein, YruB-family9e-1372.4
NC_014915:2092678:209736820973682097613246Geobacillus sp. Y412MC52 chromosome, complete genomeglutaredoxin-like protein, YruB-family9e-1372.4
NC_013411:2951559:295743629574362957681246Geobacillus sp. Y412MC61, complete genomeglutaredoxin-like protein, YruB-family9e-1372.4
NC_006510:2110430:211563121156312115876246Geobacillus kaustophilus HTA426, complete genomeglutaredoxin4e-1270.1
NC_013525:556036:563640563640564167528Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeglutaredoxin-like protein, YruB-family2e-1168.2
NC_014314:212579:233108233108233608501Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeglutaredoxin3e-1063.9
NC_015573:1979202:199729919972991997535237Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeglutaredoxin2e-0961.6
NC_009656:115390:128608128608128880273Pseudomonas aeruginosa PA7 chromosome, complete genomeglutaredoxin3e-0960.5
NC_016816:127802:170984170984171238255Pantoea ananatis LMG 5342, complete genomeglutaredoxin 32e-0858.2
NC_008262:2649289:265300926530092653242234Clostridium perfringens SM101, complete genomeGlutaredoxin-like protein, YruB-family2e-0857.8
CP002516:88500:112566112566112817252Escherichia coli KO11, complete genomeglutaredoxin 36e-0856.2
NC_007384:3956465:398102139810213981272252Shigella sonnei Ss046, complete genomeglutaredoxin 36e-0856.2
NC_010468:80000:104137104137104388252Escherichia coli ATCC 8739, complete genomeglutaredoxin 36e-0856.2
NC_012947:94930:119229119229119480252Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeglutaredoxin6e-0856.2
NC_016902:88500:112566112566112817252Escherichia coli KO11FL chromosome, complete genomeglutaredoxin 36e-0856.2
NC_004337:3590323:375678737567873757038252Shigella flexneri 2a str. 301, complete genomeglutaredoxin 32e-0754.7
NC_017986:5467279:546727954672795467533255Pseudomonas putida ND6 chromosome, complete genomeglutaredoxin 39e-0752.4
NC_009663:2023941:203541320354132035655243Sulfurovum sp. NBC37-1, complete genomeglutaredoxin2e-0651.2
NC_004344:622318:624649624649624882234Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein2e-0650.8