Pre_GI: BLASTP Hits

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Query: NC_008258:1934479:1934479 Shigella flexneri 5 str. 8401, complete genome

Start: 1934479, End: 1934850, Length: 372

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:1896446:190121919012191901572354Escherichia coli O26:H11 str. 11368 chromosome, complete genomeminor tail protein8e-28122
NC_011750:527470:545637545637545990354Escherichia coli IAI39 chromosome, complete genometail attachment protein from bacteriophage origin1e-27121
NC_013361:2169948:218600521860052186358354Escherichia coli O26:H11 str. 11368 chromosome, complete genomehead-tail adaptor2e-27120
NC_002695:2158314:217429721742972174650354Escherichia coli O157:H7 str. Sakai, complete genomeputative tail attachment protein4e-27119
NC_011745:2025725:204198220419822042335354Escherichia coli ED1a chromosome, complete genometail attachment protein5e-24109
NC_011750:1931384:194829719482971948650354Escherichia coli IAI39 chromosome, complete genometail attachment protein5e-24109
NC_011751:1377457:138079413807941381147354Escherichia coli UMN026 chromosome, complete genomeTail attachment protein (Minor capsid protein FII)5e-24109
NC_013364:863209:868118868118868471354Escherichia coli O111:H- str. 11128, complete genomeputative head-tail adaptor5e-23106
NC_004431:1352906:135630913563091356662354Escherichia coli CFT073, complete genomePutative head-tail joining protein of prophage8e-23105
NC_011745:1055354:106031010603101060678369Escherichia coli ED1a chromosome, complete genometail attachment protein1e-22105
NC_013941:5317424:533717453371745337527354Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehead-tail joining protein of prophage3e-22103
NC_011742:585908:589266589266589655390Escherichia coli S88 chromosome, complete genomeTail attachment protein (head protein gp8)4e-22103
NC_013941:2425233:245447624544762454829354Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage head-Tail Attachment6e-22102
NC_013364:2522888:255107025510702551423354Escherichia coli O111:H- str. 11128, complete genomeputative head-tail adaptor6e-22102
NC_013941:1963523:198017119801711980524354Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-21101