Pre_GI: BLASTP Hits

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Query: NC_007492:1193626:1214276 Pseudomonas fluorescens PfO-1, complete genome

Start: 1214276, End: 1215427, Length: 1152

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:2343813:2362308236230823634531146Enterobacteriaceae bacterium strain FGI 57, complete genomespermidine/putrescine-binding periplasmic protein3e-169594
NC_015276:2948923:2954973295497329561241152Marinomonas mediterranea MMB-1 chromosome, complete genomeextracellular solute-binding protein family 13e-156551
NC_015559:1478114:1486459148645914876101152Marinomonas posidonica IVIA-Po-181 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-156551
NC_008786:3681847:3690955369095536921061152Verminephrobacter eiseniae EF01-2, complete genomeextracellular solute-binding protein, family 12e-148525
NC_017150:2290681:2318414231841423195441131Acetobacter pasteurianus IFO 3283-01-42C, complete genometransporter substrate-binding periplasmic protein1e-78293
NC_016612:3361802:3379230337923033803421113Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputrescine ABC transporter periplasmic-binding protein9e-1788.2
NC_009718:1470972:1474505147450514755391035Fervidobacterium nodosum Rt17-B1, complete genomeextracellular solute-binding protein2e-1687
NC_010483:1441614:1463190146319014642001011Thermotoga sp. RQ2, complete genomespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein4e-1685.9
NC_018000:1914945:1920839192083919219511113Sinorhizobium fredii USDA 257 chromosome, complete genomeABC transporter substrate-binding protein7e-1685.1
NC_008781:2981868:3003498300349830046581161Polaromonas naphthalenivorans CJ2, complete genomeextracellular solute-binding protein, family 11e-1584.3
NC_013173:2305394:2305394230539423064311038Desulfomicrobium baculatum DSM 4028, complete genomeextracellular solute-binding protein family 12e-1584
NC_008209:253663:2723772723772734831107Roseobacter denitrificans OCh 114, complete genomespermidine/putrescine-binding periplasmic protein, putative2e-1583.6
NC_015379:3175500:3183989318398931850921104Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative putrescine-binding periplasmic protein precursor3e-1583.2
NC_002947:4362271:4368119436811943692281110Pseudomonas putida KT2440, complete genomeABC transporter, periplasmic polyamine-binding protein, putative3e-1583.2
NC_004129:3965947:3982527398252739836271101Pseudomonas fluorescens Pf-5, complete genomeputrescine ABC transporter, periplasmic putrescine-binding protein4e-1582.8
NC_016830:3697173:3704398370439837055011104Pseudomonas fluorescens F113 chromosome, complete genomeperiplasmic spermidine putrescine-binding protein4e-1582.8
NC_008027:3844355:3863214386321438643171104Pseudomonas entomophila L48, complete genomeABC transporter, periplasmic polyamine-binding protein3e-1479.7
NC_009439:101174:1242421242421253361095Pseudomonas mendocina ymp, complete genomeextracellular solute-binding protein3e-1479.7
NC_009922:2721343:2741311274131127423571047Alkaliphilus oremlandii OhILAs, complete genomeextracellular solute-binding protein family 15e-1479.3
NC_016048:1930089:1955292195529219563651074Oscillibacter valericigenes Sjm18-20, complete genomespermidine/putrescine ABC transporter spermidine/putrescine-binding protein2e-1377
NC_015379:6714545:6732759673275967338591101Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative ABC transporter, periplasmic component4e-1376.3
NC_014221:38000:5405354053551231071Truepera radiovictrix DSM 17093 chromosome, complete genomeextracellular solute-binding protein family 14e-1375.9
NC_016593:762216:7679087679087689811074Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completespermidine/putrescine-binding periplasmic protein6e-1375.5
NC_020134:1328302:1342631134263113436891059Clostridium stercorarium subsp. stercorarium DSM 8532, completespermidine/putrescine transport system substarte-binding protein PotD2e-1273.6
NC_014206:2941575:2955729295572929568021074Geobacillus sp. C56-T3 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-1273.2
NC_004129:3123000:3128254312825431293421089Pseudomonas fluorescens Pf-5, complete genomeputrescine ABC transporter, periplasmic putrescine-binding protein4e-1272.8
NC_019897:3810000:3812967381296738140371071Thermobacillus composti KWC4 chromosome, complete genomespermidine/putrescine-binding periplasmic protein1e-1171.2
NC_012560:4929683:4936837493683749379521116Azotobacter vinelandii DJ, complete genomePolyamine transporter periplasmic protein PotF1e-1171.2
NC_021150:4929670:4936824493682449379391116Azotobacter vinelandii CA6, complete genomePolyamine transporter periplasmic protein PotF1e-1171.2
NC_009512:1025365:1028350102835010294291080Pseudomonas putida F1, complete genomeextracellular solute-binding protein, family 12e-1170.9
NC_006510:746814:7525867525867536591074Geobacillus kaustophilus HTA426, complete genomespermidine/putrescine ABC transporter (substrate-binding protein)2e-1170.5
NC_009831:1255995:1257662125766212587621101Shewanella sediminis HAW-EB3, complete genomeextracellular solute-binding protein, family 13e-1170.1
NC_008309:1289370:1310334131033413114191086Haemophilus somnus 129PT, complete genomespermidine/putrescine-binding periplasmic protein9e-1168.2
NC_010519:1802294:1824678182467818257631086Haemophilus somnus 2336 chromosome, complete genomeextracellular solute-binding protein1e-1068.2
NC_016590:548312:5483125483125494121101Burkholderia sp. YI23 chromosome 3, complete sequenceextracellular solute-binding protein5e-1065.9
NC_012914:469117:4691174691174701871071Paenibacillus sp. JDR-2, complete genomeextracellular solute-binding protein family 17e-1065.5
NC_009672:30000:3000930009311631155Ochrobactrum anthropi ATCC 49188 plasmid pOANT04, completeextracellular solute-binding protein1e-0964.7
NC_002947:4167500:4241729424172942428321104Pseudomonas putida KT2440, complete genomeperiplasmic polyamine-binding protein, putative5e-0962.4
NC_008312:4358134:4377026437702643780901065Trichodesmium erythraeum IMS101, complete genomeextracellular solute-binding protein, family 15e-0962.4
NC_010278:398521:4181284181284192101083Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,spermidine/putrescine-binding periplasmic protein4e-0859.7
NC_009053:393700:4134014134014144831083Actinobacillus pleuropneumoniae L20, complete genomespermidine/putrescine-binding periplasmic protein 1 precursor4e-0859.7
NC_010939:405477:4411834411834422651083Actinobacillus pleuropneumoniae serovar 7 str. AP76, completespermidine/putrescine-binding periplasmic protein 1 precursor5e-0859.3
NC_020829:940692:9802589802589813701113Pseudomonas denitrificans ATCC 13867, complete genomeextracellular solute-binding protein5e-0859.3
NC_017059:3404000:3404073340407334052271155Rhodospirillum photometricum DSM 122, complete genomeSpermidine/putrescine-binding periplasmic protein9e-0858.5
NC_004461:779000:7919067919067929791074Staphylococcus epidermidis ATCC 12228, complete genomepotD protein1e-0758.2
NC_007929:111092:1330981330981341831086Lactobacillus salivarius subsp. salivarius UCC118, complete genomeSpermidine/putrescine-binding protein2e-0757.4
NC_002505:1507860:1523041152304115241411101Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein4e-0756.2
NC_012578:1465302:1480483148048314815831101Vibrio cholerae M66-2 chromosome I, complete sequencespermidine/putrescine ABC transporter substrate-binding protein4e-0756.2
NC_012668:2115228:2119984211998421210301047Vibrio cholerae MJ-1236 chromosome 1, complete sequenceABC transporter periplasmic spermidine putrescine-binding protein PotD4e-0756.2
NC_016445:984856:1000036100003610010671032Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein4e-0756.2
NC_016944:1504888:1520069152006915211001032Vibrio cholerae IEC224 chromosome I, complete sequencespermidine/putrescine transport system substrate-binding protein4e-0756.2
NC_009457:1068000:1081457108145710825571101Vibrio cholerae O395 chromosome 2, complete sequencespermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein7e-0755.5
NC_016113:1143580:1142327114232711435831257Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceABC transporter substrate-binding protein1e-0654.7
NC_007650:84140:9424394243952741032Burkholderia thailandensis E264 chromosome II, complete sequenceputrescine ABC transporter, periplasmic putrescine-binding protein, putative1e-0654.3
NC_009078:74954:8604786047870781032Burkholderia pseudomallei 1106a chromosome II, complete sequenceABC transport system, exported substrate-binding protein4e-0653.1
NC_007435:1914375:1924940192494019262981359Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative ABC transport system, exported substrate-binding protein5e-0652.8