Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:2115228 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
21152282116031804hypothetical proteinBLASTP
21160212116827807hypothetical proteinBLASTP
211715221182851134putrescinespermidine ABC transporter ATPase proteinQuickGO ontologyBLASTP
21182662119126861spermidineputrescine ABC transporter membrane proteinQuickGO ontologyBLASTP
21191262119896771spermidineputrescine ABC transporter membrane proteinQuickGO ontologyBLASTP
211998421210301047ABC transporter periplasmic spermidine putrescine-binding protein PotDQuickGO ontologyBLASTP
212114221221791038putrescine ABC transporter putrescine-binding protein PotFQuickGO ontologyBLASTP
21223262123060735chromosome segregation ATPaseQuickGO ontologyBLASTP
21230772123235159hypothetical proteinBLASTP
212373821251141377sodiumalanine symporterQuickGO ontologyBLASTP
21251872125825639hypothetical proteinBLASTP
21259132126545633hypothetical proteinBLASTP
21267952127538744hypothetical proteinBLASTP
212753521294601926lipase family proteinQuickGO ontologyBLASTP
21294632130323861hypothetical proteinBLASTP
213030221337933492VgrG proteinQuickGO ontologyBLASTP
21339212134439519Hcp proteinQuickGO ontologyBLASTP
213466421362111548thermostable carboxypeptidase 1QuickGO ontologyBLASTP
213643321381691737methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP