Pre_GI Gene

Some Help

Host: NC_016944 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016944:1504888 Vibrio cholerae IEC224 chromosome I, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
150488815063721485thermostable carboxypeptidase 1QuickGO ontologyBLASTP
15066601507178519hcp proteinQuickGO ontologyBLASTP
150730615107973492type VI secretion system secreted protein VgrGQuickGO ontologyBLASTP
15108091511636828hypothetical proteinBLASTP
151163915135641926hypothetical proteinBLASTP
15135611514304744hypothetical proteinBLASTP
15144491515186738hypothetical proteinBLASTP
15152741515912639hypothetical proteinBLASTP
151598515173611377alanine or glycinecation symporter AGCS family proteinQuickGO ontologyBLASTP
15178641518022159hypothetical proteinBLASTP
15180391518773735hypothetical proteinBLASTP
151892015199571038spermidineputrescine ABC transporter substrate-binding proteinQuickGO ontologyBLASTP
152006915211001032spermidineputrescine transport system substrate-binding proteinQuickGO ontologyBLASTP
15212031521973771spermidineputrescine ABC transporter membrane proteinQuickGO ontologyBLASTP
15219731522830858spermidineputrescine ABC transporter membrane proteinQuickGO ontologyBLASTP
152281415239471134putrescinespermidine ABC transporter ATPaseQuickGO ontologyBLASTP