Pre_GI: OUP Neighbours

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Query: NC_016944:1504888 Vibrio cholerae IEC224 chromosome I, complete sequence

D: 33.995

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

Number of Neighbours: 128




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_017171:280762Acinetobacter baumannii MDR-ZJ06 chromosome, complete genome76.4675 %Subject ←→ Query24.4027
NC_011312:3060371*Aliivibrio salmonicida LFI1238 chromosome chromosome 1, complete78.6305 %Subject ←→ Query24.7446
NC_010999:2516000Lactobacillus casei, complete genome76.7279 %Subject ←→ Query27.1158
NC_015224:2618192*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.095 %Subject ←→ Query27.59
NC_015731:169989Nitrosomonas sp. Is79A3 chromosome, complete genome75.1409 %Subject ←→ Query27.6873
NC_015222:1905194*Nitrosomonas sp. AL212 chromosome, complete genome75.4565 %Subject ←→ Query27.742
NC_016614:1178000Vibrio sp. EJY3 chromosome 2, complete sequence77.9902 %Subject ←→ Query28.148
NC_017162:270460Acinetobacter baumannii 1656-2 chromosome, complete genome76.8107 %Subject ←→ Query28.3475
NC_017328:3935185Shigella flexneri 2002017 chromosome, complete genome76.5227 %Subject ←→ Query28.6823
NC_015222:1607757Nitrosomonas sp. AL212 chromosome, complete genome76.1979 %Subject ←→ Query29.1095
NC_009381:3680638*Yersinia pestis Pestoides F chromosome, complete genome76.201 %Subject ←→ Query29.347
NC_014966:1668822*Vibrio vulnificus MO6-24/O chromosome II, complete sequence82.2426 %Subject ←→ Query29.5963
NC_015224:2061951*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.1838 %Subject ←→ Query29.6
NC_004347:718091Shewanella oneidensis MR-1, complete genome77.2947 %Subject ←→ Query30.0041
NC_009052:2512373Shewanella baltica OS155, complete genome80.53 %Subject ←→ Query30.0584
NC_012578:1838470*Vibrio cholerae M66-2 chromosome I, complete sequence82.7145 %Subject ←→ Query30.49
NC_007946:2625461Escherichia coli UTI89, complete genome75.4075 %Subject ←→ Query30.6978
NC_016614:1543333*Vibrio sp. EJY3 chromosome 2, complete sequence78.1863 %Subject ←→ Query30.8024
NC_014966:919442Vibrio vulnificus MO6-24/O chromosome II, complete sequence80.7751 %Subject ←→ Query30.8614
NC_014965:2200974Vibrio vulnificus MO6-24/O chromosome I, complete sequence79.1605 %Subject ←→ Query31.4634
NC_009457:1068000Vibrio cholerae O395 chromosome 2, complete sequence93.9246 %Subject ←→ Query31.5974
CU928145:4950723*Escherichia coli 55989 chromosome, complete genome75.5116 %Subject ←→ Query31.6756
NC_011748:4950723*Escherichia coli 55989, complete genome75.5116 %Subject ←→ Query31.6756
NC_009456:383819Vibrio cholerae O395 chromosome 1, complete sequence78.3425 %Subject ←→ Query31.8109
NC_017171:1331794Acinetobacter baumannii MDR-ZJ06 chromosome, complete genome76.25 %Subject ←→ Query31.8137
NC_016445:984856Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete96.2592 %Subject ←→ Query32.0768
NC_008149:1842500*Yersinia pestis Nepal516, complete genome75.4136 %Subject ←→ Query32.1465
NC_008800:1090000*Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,76.489 %Subject ←→ Query32.2532
NC_008150:1705152*Yersinia pestis Antiqua, complete genome75.8241 %Subject ←→ Query32.6597
NC_012668:62500*Vibrio cholerae MJ-1236 chromosome 1, complete sequence76.777 %Subject ←→ Query32.8125
NC_017387:1110412Acinetobacter baumannii TCDC-AB0715 chromosome, complete genome76.1091 %Subject ←→ Query32.9472
NC_010498:4856011Escherichia coli SMS-3-5, complete genome76.78 %Subject ←→ Query33.1043
NC_012667:504534Vibrio cholerae MJ-1236 chromosome 2, complete genome78.9982 %Subject ←→ Query33.3753
NC_013361:3287671Escherichia coli O26:H11 str. 11368 chromosome, complete genome76.4338 %Subject ←→ Query33.5087
NC_013421:1819036Pectobacterium wasabiae WPP163, complete genome77.0343 %Subject ←→ Query34.0279
NC_008800:1300500Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,76.4461 %Subject ←→ Query34.0771
NC_012583:861225Vibrio cholerae O395 chromosome chromosome II, complete sequence79.7304 %Subject ←→ Query34.0915
NC_010465:3431500*Yersinia pseudotuberculosis YPIII, complete genome75.3676 %Subject ←→ Query34.3332
NC_012583:683887Vibrio cholerae O395 chromosome chromosome II, complete sequence81.0815 %Subject ←→ Query34.4236
NC_016445:2663837Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete81.2469 %Subject ←→ Query34.4467
NC_012580:796387Vibrio cholerae M66-2 chromosome II, complete sequence79.6569 %Subject ←→ Query34.4761
NC_016945:822229Vibrio cholerae IEC224 chromosome II, complete sequence79.7457 %Subject ←→ Query34.885
NC_002506:822401Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete79.7518 %Subject ←→ Query34.9693
NC_012578:1465302Vibrio cholerae M66-2 chromosome I, complete sequence97.595 %Subject ←→ Query34.9943
NC_017027:1329708Pasteurella multocida subsp. multocida str. HN06 chromosome,75.2482 %Subject ←→ Query35.2079
NC_012668:368305*Vibrio cholerae MJ-1236 chromosome 1, complete sequence80.0306 %Subject ←→ Query35.5397
NC_016446:522936Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, complete79.7457 %Subject ←→ Query35.6205
NC_008149:318860Yersinia pestis Nepal516, complete genome75.1409 %Subject ←→ Query35.7355
NC_008800:2013450*Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,75.0092 %Subject ←→ Query35.7481
NC_005810:4306716Yersinia pestis biovar Microtus str. 91001, complete genome75.0214 %Subject ←→ Query35.7971
NC_016944:238580*Vibrio cholerae IEC224 chromosome I, complete sequence80.3431 %Subject ←→ Query35.8534
NC_012691:2097287*Tolumonas auensis DSM 9187, complete genome75.6526 %Subject ←→ Query35.9123
NC_015224:1391088Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.0735 %Subject ←→ Query36.0736
NC_012582:272320Vibrio cholerae O395 chromosome chromosome I, complete sequence80.193 %Subject ←→ Query36.1945
NC_013961:851044*Erwinia amylovora, complete genome75.5637 %Subject ←→ Query36.5306
NC_012667:703852Vibrio cholerae MJ-1236 chromosome 2, complete genome79.9081 %Subject ←→ Query36.7099
NC_010995:4525119Cellvibrio japonicus Ueda107, complete genome75.3094 %Subject ←→ Query36.7553
NC_014010:1850500Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete76.4461 %Subject ←→ Query36.9283
NC_015224:1763848Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,76.0784 %Subject ←→ Query37.1095
NC_010159:1288000Yersinia pestis Angola, complete genome75.5423 %Subject ←→ Query37.7291
NC_012668:2115228Vibrio cholerae MJ-1236 chromosome 1, complete sequence94.4884 %Subject ←→ Query38.2417
NC_010634:4463727Yersinia pseudotuberculosis PB1/+, complete genome75.5607 %Subject ←→ Query38.8379
NC_012668:442601*Vibrio cholerae MJ-1236 chromosome 1, complete sequence79.1759 %Subject ←→ Query40.2029
NC_016602:173314Vibrio furnissii NCTC 11218 chromosome 1, complete sequence79.4271 %Subject ←→ Query42.0404