Pre_GI: BLASTP Hits

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Query: NC_006512:1942000:1962398 Idiomarina loihiensis L2TR, complete genome

Start: 1962398, End: 1962976, Length: 579

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012691:1144715:116401511640151164527513Tolumonas auensis DSM 9187, complete genomeouter membrane lipoprotein Slp2e-1789
NC_020211:2985157:300866730086673009257591Serratia marcescens WW4, complete genomelipoprotein3e-1788.2
NC_016010:1169850:119107011910701191603534Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeSlp family outer membrane protein1e-1686.3
NC_016513:1924242:194397019439701944527558Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeouter membrane protein6e-1580.5
NC_013416:1588369:160804216080421608599558Aggregatibacter actinomycetemcomitans D11S-1, complete genomeouter membrane protein7e-1580.5
NC_009483:2401209:240806424080642408624561Geobacter uraniireducens Rf4 chromosome, complete genomeouter membrane lipoprotein Slp2e-1479.3
NC_020181:734477:734477734477735058582Enterobacter aerogenes EA1509E, complete genomeStarvation lipoprotein Slp paralog2e-1478.6
NC_009800:3685651:369527236952723695838567Escherichia coli HS, complete genomeouter membrane lipoprotein, Slp family3e-1478.2
NC_009801:3956917:396577239657723966338567Escherichia coli E24377A, complete genomeouter membrane lipoprotein, Slp family3e-1478.2
NC_010658:3622610:363176436317643632330567Shigella boydii CDC 3083-94, complete genomeouter membrane lipoprotein, Slp family3e-1478.2
AP010958:4313462:432117143211714321737567Escherichia coli O103:H2 str. 12009 DNA, complete genomeouter membrane lipoprotein Slp3e-1478.2
CP002185:3822470:384974038497403850306567Escherichia coli W, complete genomeouter membrane lipoprotein3e-1478.2
NC_010468:231000:240128240128240694567Escherichia coli ATCC 8739, complete genomeouter membrane lipoprotein, Slp family3e-1478.2
NC_011748:3983432:401906940190694019635567Escherichia coli 55989, complete genomeouter membrane lipoprotein3e-1478.2
CP002516:246767:255767255767256333567Escherichia coli KO11, complete genomeouter membrane lipoprotein, Slp family3e-1478.2
CU928145:3983432:401906940190694019635567Escherichia coli 55989 chromosome, complete genomeouter membrane lipoprotein3e-1478.2
CU928160:3709081:371794637179463718512567Escherichia coli IAI1 chromosome, complete genomeouter membrane lipoprotein3e-1478.2
NC_011741:3709081:371794637179463718512567Escherichia coli IAI1 chromosome, complete genomeouter membrane lipoprotein3e-1478.2
NC_012947:248000:257158257158257724567Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeouter membrane lipoprotein, Slp family3e-1478.2
NC_010498:3838419:386543138654313866153723Escherichia coli SMS-3-5, complete genomeSlp family outer membrane lipoprotein3e-1478.2
NC_017328:3655876:366571036657103666441732Shigella flexneri 2002017 chromosome, complete genomeOuter membrane protein induced after carbon starvation3e-1478.2
NC_008258:3581583:359111535911153591846732Shigella flexneri 5 str. 8401, complete genomeouter membrane protein induced after carbon starvation3e-1478.2
NC_013361:4566779:457457445745744575296723Escherichia coli O26:H11 str. 11368 chromosome, complete genome3e-1478.2
NC_016902:246767:255767255767256333567Escherichia coli KO11FL chromosome, complete genomeouter membrane lipoprotein, Slp family3e-1478.2
NC_016822:3946500:395799939579993958565567Shigella sonnei 53G, complete genomeouter membrane lipoprotein3e-1478.2
NC_013364:4306000:431345043134504314016567Escherichia coli O111:H- str. 11128, complete genomeouter membrane lipoprotein Slp3e-1478.2
NC_013353:4313462:432117143211714321737567Escherichia coli O103:H2 str. 12009, complete genomeouter membrane lipoprotein Slp3e-1478.2
NC_012967:3549880:358345235834523584018567Escherichia coli B str. REL606 chromosome, complete genomeouter membrane lipoprotein3e-1478.2
NC_004337:3621985:363098636309863631585600Shigella flexneri 2a str. 301, complete genomeouter membrane protein induced after carbon starvation4e-1477.8
NC_004741:4132056:414226341422634142862600Shigella flexneri 2a str. 2457T, complete genomeouter membrane protein induced after carbon starvation4e-1477.8
NC_007384:3741708:375070837507083751307600Shigella sonnei Ss046, complete genomeouter membrane protein induced after carbon starvation4e-1477.8
NC_004337:3590323:363098636309863631585600Shigella flexneri 2a str. 301, complete genomeouter membrane protein induced after carbon starvation4e-1477.8
NC_007613:3470314:349949434994943500093600Shigella boydii Sb227, complete genomeSlp4e-1477.8
NC_011415:3887997:389907338990733899672600Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-1477.8
AC_000091:3976888:398588839858883986454567Escherichia coli W3110 DNA, complete genomeouter membrane lipoprotein5e-1477.4
NC_010473:3722571:374972937497293750295567Escherichia coli str. K-12 substr. DH10B, complete genomeouter membrane lipoprotein5e-1477.4
NC_000913:3624826:365198436519843652550567Escherichia coli K12, complete genomeouter membrane lipoprotein5e-1477.4
NC_012759:3529657:354047835404783541044567Escherichia coli BW2952 chromosome, complete genomeouter membrane lipoprotein5e-1477.4
NC_013282:2582720:260269726026972603230534Cronobacter turicensis, complete genomeUncharacterized lipoprotein yeaY7e-1477
NC_016147:2337244:233724423372442337795552Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeSlp family outer membrane protein9e-1476.6
NC_015851:181721:183990183990184277288Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceouter membrane protein Slp1e-0962.8