Pre_GI: BLASTP Hits

Some Help

Query: NC_004741:2741971:2753988 Shigella flexneri 2a str. 2457T, complete genome

Start: 2753988, End: 2754437, Length: 450

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:2905413:2908014290801429102662253Shigella flexneri 5 str. 8401, complete genomeputative enzyme4e-85312
NC_004337:2747917:2759001275900127612532253Shigella flexneri 2a str. 301, complete genome4e-85312
NC_017328:2785309:2797883279788328001352253Shigella flexneri 2002017 chromosome, complete genomealpha amylase4e-85312
NC_011750:2928990:2952498295249829547502253Escherichia coli IAI39 chromosome, complete genomeputative alpha-amylase2e-84310
NC_010498:2847359:2860012286001228622642253Escherichia coli SMS-3-5, complete genomealpha amylase family protein2e-84310
NC_002695:3468873:3508583350858335098211239Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-84309
NC_002655:3538656:3575873357587335771111239Escherichia coli O157:H7 EDL933, complete genomehypothetical protein4e-84309
NC_011353:3573641:3612819361281936140571239Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-84309
NC_013941:3300000:3346327334632733485792253Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-84309
NC_010468:1130000:1135932113593211377731842Escherichia coli ATCC 8739, complete genomealpha amylase catalytic region9e-84308
NC_009800:2788164:2803842280384228060942253Escherichia coli HS, complete genomealpha amylase family protein3e-83306
NC_011751:3048490:3089751308975130920032253Escherichia coli UMN026 chromosome, complete genomeputative Alpha-amylase3e-83306
NC_011741:2818750:2831233283123328330741842Escherichia coli IAI1 chromosome, complete genomeputative alpha-amylase1e-82304
NC_009801:2898426:2946921294692129487621842Escherichia coli E24377A, complete genomealpha amylase domain protein1e-82304
CU928160:2818750:2831233283123328330741842Escherichia coli IAI1 chromosome, complete genomeputative Alpha-amylase1e-82304
NC_011748:2973968:2997012299701229986581647Escherichia coli 55989, complete genome5e-82302
CU928145:2973968:2997012299701229986581647Escherichia coli 55989 chromosome, complete genomefragment of putative Alpha-amylase (part 1)5e-82302
NC_010473:2839902:2876184287618428784362253Escherichia coli str. K-12 substr. DH10B, complete genome1e-81301
NC_000913:2746886:278477027847702785456687Escherichia coli K12, complete genomehypothetical protein9e-81298
AC_000091:2747520:278540427854042786090687Escherichia coli W3110 DNA, complete genomehypothetical protein9e-81298
NC_007384:2933625:2946772294677229483251554Shigella sonnei Ss046, complete genomeputative enzyme6e-1373.2