Pre_GI: BLASTN Hits

Some Help

Query: NC_004631:799810 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 799810, End: 831689, Length: 31880

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006511:79254379254382457832036Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC035400BLASTN svgBLASTP svg
NC_003198:21796882179688220742827741Salmonella enterica subsp. enterica serovar Typhi str. CT18,026130BLASTN svgBLASTP svg
NC_011149:21795922179592220743527844Salmonella enterica subsp. enterica serovar Agona str. SL483,021630BLASTN svgBLASTP svg
NC_006905:22356072235607226436328757Salmonella enterica subsp. enterica serovar Choleraesuis str018180BLASTN svgBLASTP svg
NC_009792:64288164288166509922219Citrobacter koseri ATCC BAA-895, complete genome02371BLASTN svgBLASTP svg
NC_004431:24449722444972246809923128Escherichia coli CFT073, complete genome01780BLASTN svgBLASTP svg
NC_014121:34538153453815347704723233Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01723BLASTN svgBLASTP svg
NC_015968:30230483023048304630023253Enterobacter asburiae LF7a chromosome, complete genome01651BLASTN svgBLASTP svg
NC_008253:21985832198583221778119199Escherichia coli 536, complete genome01245BLASTN svgBLASTP svg
NC_010468:1694729*1694729171759922871Escherichia coli ATCC 8739, complete genome01189BLASTN svgBLASTP svg
NC_011750:955451*95545197876923319Escherichia coli IAI39 chromosome, complete genome01174BLASTN svgBLASTP svg
NC_010473:2267851*2267851229294125091Escherichia coli str. K-12 substr. DH10B, complete genome01152BLASTN svgBLASTP svg
CP002185:2347413*2347413237250325091Escherichia coli W, complete genome01144BLASTN svgBLASTP svg
NC_014121:34839763483976350876424789Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete0914BLASTN svgBLASTP svg
NC_015968:30535653053565307621422650Enterobacter asburiae LF7a chromosome, complete genome0811BLASTN svgBLASTP svg
NC_015663:49500004950000501991769918Enterobacter aerogenes KCTC 2190 chromosome, complete genome0795BLASTN svgBLASTP svg
NC_011740:2220251*2220251224611525865Escherichia fergusonii ATCC 35469, complete genome0666BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome5e-132480BLASTN svgBLASTP svg
NC_013592:33973043397304341695019647Dickeya dadantii Ech586, complete genome8e-100373BLASTN svgBLASTP svg
NC_006155:33333033333303335118117879Yersinia pseudotuberculosis IP 32953, complete genome2e-69272BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome5e-67264BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome5e-67264BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome5e-67264BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome5e-67264BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome5e-67264BLASTN svgBLASTP svg
NC_010634:32508103250810326864117832Yersinia pseudotuberculosis PB1/+, complete genome5e-67264BLASTN svgBLASTP svg
NC_008570:1094442*1094442111732922888Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome2e-66262BLASTN svgBLASTP svg
NC_007384:2251792*2251792227443422643Shigella sonnei Ss046, complete genome2e-54222BLASTN svgBLASTP svg
CU928160:2239637*2239637226345123815Escherichia coli IAI1 chromosome, complete genome3e-53218BLASTN svgBLASTP svg
NC_007951:17112231711223173758426362Burkholderia xenovorans LB400 chromosome 1, complete sequence5e-33151BLASTN svgBLASTP svg
NC_012660:4558122*4558122459234134220Pseudomonas fluorescens SBW25 chromosome, complete genome3e-19105BLASTN svgBLASTP svg
NC_014910:20450882045088206811623029Alicycliphilus denitrificans BC chromosome, complete genome7e-1797.6BLASTN svgBLASTP svg
NC_020211:22065002206500222782621327Serratia marcescens WW4, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_014366:1814000*1814000183684822849Gamma proteobacterium HdN1, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_013194:63403963403965427420236Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete1e-1593.7BLASTN svgBLASTP svg
NC_015422:23269422326942235046523524Alicycliphilus denitrificans K601 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_010125:3467379*3467379349031122933Gluconacetobacter diazotrophicus PAl 5, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_012559:1228280*1228280127461346334Laribacter hongkongensis HLHK9, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_015057:241103*24110326799426892Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_003296:14615381461538148411822581Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete2e-1075.8BLASTN svgBLASTP svg
NC_002488:22358832235883226042224540Xylella fastidiosa 9a5c, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_006370:768745*76874579247423730Photobacterium profundum SS9 chromosome 1, complete sequence4e-0971.9BLASTN svgBLASTP svg
NC_011146:63912639128529321382Geobacter bemidjiensis Bem, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_009720:81315781315783515121995Xanthobacter autotrophicus Py2, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008786:25735582573558259844924892Verminephrobacter eiseniae EF01-2, complete genome6e-0867.9BLASTN svgBLASTP svg