Pre_GI: BLASTP Hits

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Query: NC_004631:2205821:2207587 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 2207587, End: 2207934, Length: 348

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:775636:797772797772798119348Salmonella enterica subsp. enterica serovar Typhimurium str. 798succinate dehydrogenase hydrophobic membrane anchor protein2e-43173
NC_010102:2322866:232536523253652325712348Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-43173
NC_003198:751779:773155773155773502348Salmonella enterica subsp. enterica serovar Typhi str. CT18,succinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_011083:824659:846784846784847131348Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,succinate dehydrogenase, hydrophobic membrane anchor protein2e-43173
NC_003197:776238:798375798375798722348Salmonella typhimurium LT2, complete genomesuccinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_006511:2090058:209182420918242092171348Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCsuccinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_011080:780850:802986802986803333348Salmonella enterica subsp. enterica serovar Newport str. SL254,succinate dehydrogenase, hydrophobic membrane anchor protein2e-43173
NC_011094:842038:864124864124864471348Salmonella enterica subsp. enterica serovar Schwarzengrund strsuccinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_011147:2085241:208700720870072087354348Salmonella enterica subsp. enterica serovar Paratyphi A strsuccinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_016863:776734:798871798871799218348Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1succinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_016860:816000:837205837205837552348Salmonella enterica subsp. enterica serovar Typhimurium strsuccinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_016857:775649:797786797786798133348Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74succinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_016856:776735:798872798872799219348Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssuccinate dehydrogenase cytochrome b556 small membrane subunit2e-43173
NC_016832:2201860:220435922043592204706348Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Succinate dehydrogenase hydrophobic membrane anchor subunit2e-43173
NC_016810:775649:797786797786798133348Salmonella enterica subsp. enterica serovar Typhimurium strsuccinate dehydrogenase hydrophobic membrane anchor protein2e-43173
NC_010159:1417993:143792314379231438270348Yersinia pestis Angola, complete genomesuccinate dehydrogenase, hydrophobic membrane anchor protein6e-30129
NC_008150:650899:670507670507670854348Yersinia pestis Antiqua, complete genomesuccinate dehydrogenase hydrophobic membrane anchor protein6e-30129
NC_010634:1342393:136521613652161365563348Yersinia pseudotuberculosis PB1/+, complete genomesuccinate dehydrogenase, hydrophobic membrane anchor protein6e-30129
NC_014029:1283500:130296813029681303315348Yersinia pestis Z176003 chromosome, complete genomesuccinate dehydrogenase cytochrome b556 small membrane subunit6e-30129
NC_017154:1225500:124506112450611245408348Yersinia pestis D106004 chromosome, complete genomesuccinate dehydrogenase cytochrome b556 small membrane subunit6e-30129
NC_017168:4155143:417578741757874176134348Yersinia pestis A1122 chromosome, complete genomesuccinate dehydrogenase cytochrome b556 small membrane subunit6e-30129
NC_017265:1136000:115510111551011155448348Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,succinate dehydrogenase, membrane subunit, binds cytochrome b5566e-30129
NC_003143:1233128:125377112537711254118348Yersinia pestis CO92, complete genomesuccinate dehydrogenase cytochrome b556 small membrane subunit6e-30129
NC_009092:1874888:189921918992191899566348Shewanella loihica PV-4, complete genomeconserved hypothetical succinate dehydrogenase, hydrophobic subunit6e-29125
NC_012779:2755338:276217627621762762523348Edwardsiella ictaluri 93-146, complete genomesuccinate dehydrogenase, hydrophobic membrane anchor protein, putative3e-24110
NC_009656:3817261:382711838271183827492375Pseudomonas aeruginosa PA7 chromosome, complete genomesuccinate dehydrogenase subunit D3e-1580.5
NC_007963:1370903:138907013890701389417348Chromohalobacter salexigens DSM 3043, complete genomesuccinate dehydrogenase (D subunit)5e-1579.7
NC_009434:2006500:201993720199372020305369Pseudomonas stutzeri A1501, complete genomesuccinate dehydrogenase (D subunit)3e-1373.9
NC_015740:1845370:185756618575661857934369Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completesuccinate dehydrogenase subunit D3e-1373.9
NC_010678:642769:660454660454660819366Ralstonia pickettii 12J chromosome 2, complete sequencesuccinate dehydrogenase, hydrophobic membrane anchor protein4e-1166.6
NC_013861:728648:751953751953752312360Legionella longbeachae NSW150, complete genomesuccinate dehydrogenase, hydrophobic membrane anchor protein4e-1063.5
NC_010336:996661:104642910464291046782354Francisella philomiragia subsp. philomiragia ATCC 25017, completesuccinate dehydrogenase hydrophobic membrane anchor protein2e-0857.8
NC_015696:517941:567875567875568228354Francisella sp. TX077308 chromosome, complete genomesuccinate dehydrogenase hydrophobic membrane anchor protein3e-0857.4
NC_008245:66852:742807428074648369Francisella tularensis subsp. tularensis FSC 198, complete genomesuccinate dehydrogenase hydrophobic membrane anchor protein4e-0856.6
NC_010677:96470:146114146114146482369Francisella tularensis subsp. mediasiatica FSC147, complete genomesuccinate dehydrogenase, hydrophobic membrane anchor protein4e-0856.6
NC_008601:1733940:175083817508381751206369Francisella tularensis subsp. novicida U112, complete genomesuccinate dehydrogenase hydrophobic membrane anchor protein4e-0856.6
NC_006570:24636:742647426474632369Francisella tularensis subsp. tularensis Schu 4, complete genomesuccinate dehydrogenase hydrophobic membrane anchor protein4e-0856.6
NC_009257:151737:159180159180159533354Francisella tularensis subsp. tularensis WY96-3418 chromosome,succinate dehydrogenase, hydrophobic membrane anchor protein4e-0856.6
NC_016933:66854:742827428274650369Francisella tularensis TIGB03 chromosome, complete genomeSuccinate dehydrogenase hydrophobic membrane anchor protein4e-0856.6
NC_016937:66854:742827428274650369Francisella tularensis subsp. tularensis TI0902 chromosome,Succinate dehydrogenase hydrophobic membrane anchor protein4e-0856.6
NC_009749:1699152:171609817160981716451354Francisella tularensis subsp. holarctica FTA, complete genomesuccinate dehydrogenase hydrophobic membrane anchor protein1e-0755.1
NC_007880:1703346:172019917201991720567369Francisella tularensis subsp. holarctica, complete genomesuccinate dehydrogenase hydrophobic membrane anchor protein2e-0754.7
NC_008369:1702885:171983117198311720199369Francisella tularensis subsp. holarctica OSU18, complete genomesuccinate dehydrogenase2e-0754.7
NC_005085:1096000:111223311122331112577345Chromobacterium violaceum ATCC 12472, complete genomesuccinate dehydrogenase, hydrophobic subunit5e-0753.1
NC_014910:2015627:202818420281842028549366Alicycliphilus denitrificans BC chromosome, complete genomesuccinate dehydrogenase, hydrophobic membrane anchor protein2e-0651.6
NC_015563:4773415:478200847820084782373366Delftia sp. Cs1-4 chromosome, complete genomesuccinate dehydrogenase, hydrophobic membrane anchor protein7e-0649.3