Pre_GI: BLASTP Hits

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Query: NC_004432:80780:98853 Mycoplasma penetrans HF-2, complete genome

Start: 98853, End: 99674, Length: 822

Host Lineage: Mycoplasma penetrans; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This strain has been isolated from the tracheal aspirate of a previously healthy HIV-negative patient with severe respiratory symptoms caused by this infection. Causes urogenital and respiratory disease. This genus currently comprises more than 120 obligate parasitic species found in a wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met. The latter is one of the major traits that puts them in the separate taxonomic group of microorganisms, class Mollicutes. The cell membrane is rich in protein components (up to two thirds of the membrane mass) that largely consists of highly structurally adaptive lipoproteins employed in invading the host immune system, attachment to the host cells, and pathogenic invasion. Cell division proceeds via normal binary fission or via elongation of a parental cell to form multinucleated filaments and the subsequent breakup to form coccoid bodies.Mycoplasmas carry the smallest genomes of self-replicating cells (less than 500 recognizable coding regions), which is one of the reasons they were among the first microorganisms selected for the genome-sequencing projects. During their evolution, mycoplasmas appear to have lost all of the genes involved in amino acid and cofactor biosynthesis, synthesis of the cell wall and lipid metabolism, resulting in a requirement for the full spectrum of substrates and cofactors taken up from the host or from the complex artificial culture medium. They have lost a number of genes involved in cellular processes, such as cell division, heat shock response, regulatory genes, the two-component signal transduction systems, histidine protein kinases or their target response regulators, and most transcription factors. The majority of mycoplasmas are deficient in genes coding for components of intermediary and energy metabolism and thus are dependent mostly on glycolysis as an ATP-generating pathway. This organism infects humans in the urogenital and respiratory tracts though invasion of tissues. The disease is mainly associated with HIV-1 infection, particularly in the homosexual population, and is very persistent and believed to contribute to the deterioration of the immune system during HIV. Mycoplasma penetrans infection has also been suggested to be a primary cause of some forms of human urethritis and respiratory disease in non-HIV individuals.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014614:1259236:125923612592361260054819Clostridium sticklandii, complete genomeCof-like hydrolase5e-1788.6
NC_015391:1013608:102168010216801022489810Carnobacterium sp. 17-4 chromosome, complete genomehydrolase, haloacid dehalogenase-like family1e-1687
NC_009009:540992:5475645475645489611398Streptococcus sanguinis SK36, complete genomeCof family protein, putative3e-1582.4
NC_006448:465656:475588475588476445858Streptococcus thermophilus LMG 18311, complete genomehypothetical protein4e-1582
NC_013895:35410:4494544945459731029Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeHAD hydrolase, family IIB5e-1581.6
NC_010723:3133302:314657531465753147402828Clostridium botulinum E3 str. Alaska E43, complete genomephosphatase YidA2e-1480.1
NC_015975:923812:928139928139928945807Lactobacillus ruminis ATCC 27782 chromosome, complete genomehydrolase, HAD superfamily1e-1377.4
NC_013316:2623199:263915426391542639975822Clostridium difficile R20291, complete genomeputative hydrolase9e-1477.4
NC_013315:2531019:255859825585982559419822Clostridium difficile CD196 chromosome, complete genomehydrolase9e-1477.4
NC_017179:2539031:256661025666102567431822Clostridium difficile BI1, complete genomehydrolase9e-1477.4
NC_017316:2466244:246685424668542467633780Enterococcus faecalis OG1RF chromosome, complete genomehydrolase2e-1376.6
NC_004668:2938000:293874929387492939525777Enterococcus faecalis V583, complete genomehydrolase, haloacid dehalogenase-like family2e-1376.6
NC_013171:228356:249644249644250441798Anaerococcus prevotii DSM 20548, complete genomeCof-like hydrolase2e-1376.3
NC_007633:952728:965268965268966110843Mycoplasma capricolum subsp. capricolum ATCC 27343, completehydrolase, haloacid dehalogenase-like family, putative4e-1375.5
AP010958:922937:943835943835944650816Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted hydrolase9e-1374.3
NC_013353:922937:943835943835944650816Escherichia coli O103:H2 str. 12009, complete genomehydrolase9e-1374.3
NC_013171:228356:250441250441251250810Anaerococcus prevotii DSM 20548, complete genomeCof-like hydrolase9e-1374.3
NC_013364:928486:948106948106948921816Escherichia coli O111:H- str. 11128, complete genomeputative hydrolase8e-1374.3
NC_016077:113246:113246113246114127882Acidaminococcus intestini RyC-MR95 chromosome, complete genomehydrolase8e-1374.3
NC_014751:946155:958727958727959569843Mycoplasma leachii PG50 chromosome, complete genomeHAD hydrolase, family IIB8e-1374.3
NC_015949:2002752:200507320050732005873801Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeCof-like hydrolase7e-1374.3
NC_011071:4235830:425838542583854259218834Stenotrophomonas maltophilia R551-3, complete genomeCof-like hydrolase2e-1273.2
NC_014652:666227:683550683550684350801Caldicellulosiruptor hydrothermalis 108 chromosome, completecof-like hydrolase2e-1273.2
NC_012780:284336:308286308286309122837Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencehypothetical protein4e-1272
NC_009615:1305678:130759013075901308396807Parabacteroides distasonis ATCC 8503 chromosome, complete genomehaloacid dehalogenase4e-1272
NC_015224:2701914:271536227153622716180819Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative hydrolase5e-1271.6
NC_014364:2904443:290646529064652907304840Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeCof-like hydrolase6e-1271.6
NC_014921:22828:320763207632933858Mycoplasma fermentans M64 chromosome, complete genomehypothetical protein7e-1271.2
NC_014616:1415951:141784414178441418695852Bifidobacterium bifidum S17 chromosome, complete genomehydrolase1e-1170.9
NC_020272:1384525:139059713905971391409813Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein2e-1169.7
NC_014829:4511738:452419745241974524940744Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeCof-like hydrolase2e-1169.7
NC_014448:626909:646155646155646964810Mycoplasma hyorhinis HUB-1 chromosome, complete genomeHydrolase of the HAD family2e-1169.7
NC_009725:2517428:253352425335242534336813Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein3e-1169.3
NC_016612:3361802:336611233661123366927816Klebsiella oxytoca KCTC 1686 chromosome, complete genomephosphatase YbjI4e-1168.9
NC_017033:678321:701958701958702770813Frateuria aurantia DSM 6220 chromosome, complete genomeHAD-superfamily hydrolase4e-1168.9
NC_008800:2695977:270877327087732709585813Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative hydrolase4e-1168.9
NC_009253:3317533:331753333175333318339807Desulfotomaculum reducens MI-1 chromosome, complete genomecof family hydrolase3e-1168.9
NC_008262:1721496:172715317271531727983831Clostridium perfringens SM101, complete genomeHAD hydrolase, IIB family4e-1168.6
NC_014483:1376500:137765913776591378459801Paenibacillus polymyxa E681 chromosome, complete genomehypothetical protein5e-1168.6
NC_016641:3173250:317469231746923175489798Paenibacillus terrae HPL-003 chromosome, complete genomecof-like hydrolase6e-1168.2
NC_016845:1773416:177560717756071776419813Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative hydrolase6e-1168.2
NC_014622:1514416:151546515154651516265801Paenibacillus polymyxa SC2 chromosome, complete genomecof-like hydrolase8e-1167.8
NC_015391:1013608:103293110329311033743813Carnobacterium sp. 17-4 chromosome, complete genomeputative phosphatase1e-1067
NC_013416:16493:281562815628974819Aggregatibacter actinomycetemcomitans D11S-1, complete genomephosphatase YbhA2e-1066.6
NC_004337:3590323:387580438758043876616813Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-1066.2
NC_016513:317197:330470330470331288819Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completephosphatase YbhA2e-1066.2
NC_014364:1990000:200470020047002005506807Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeCof-like hydrolase3e-1065.9
NC_012470:678661:687445687445688272828Streptococcus equi subsp. zooepidemicus, complete genomehaloacid dehalogenase-like hydrolase3e-1065.5
NC_020410:2509057:253708125370812537866786Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeSugar phosphatase SupH5e-1065.1
NC_004432:1310322:133169413316941332524831Mycoplasma penetrans HF-2, complete genomehaloacid dehalogenase-like hydrolase6e-1064.7
NC_017191:2514401:252642125264212527233813Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein7e-1064.7
NC_017188:2512357:252437725243772525189813Bacillus amyloliquefaciens TA208 chromosome, complete genomehypothetical protein7e-1064.7
NC_014921:777047:777047777047777895849Mycoplasma fermentans M64 chromosome, complete genomehydrolase of the had family8e-1064.3
NC_014376:189319:194322194322195155834Clostridium saccharolyticum WM1 chromosome, complete genomeCof-like hydrolase8e-1064.3
NC_017243:517684:537454537454538257804Brachyspira intermedia PWS/A chromosome, complete genomehydrolase8e-1064.3
NC_014752:617987:617987617987618775789Neisseria lactamica ST-640, complete genomehypothetical protein8e-1064.3
NC_008528:331260:353818353818354633816Oenococcus oeni PSU-1, complete genomePredicted hydrolase of the HAD superfamily1e-0963.9
NC_015389:809474:814796814796815587792Coriobacterium glomerans PW2 chromosome, complete genomeHAD-superfamily hydrolase, subfamily IIB2e-0963.2
NC_009436:1466580:146937414693741470186813Enterobacter sp. 638, complete genomecof family hydrolase2e-0963.2
NC_004567:343500:359163359163359954792Lactobacillus plantarum WCFS1, complete genomehydrolase, HAD superfamily, Cof family2e-0963.2
NC_014554:337268:351615351615352406792Lactobacillus plantarum subsp. plantarum ST-III chromosome,HAD superfamily hydrolase2e-0963.2
NC_015949:2002752:202052120205212021360840Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeCof-like hydrolase2e-0963.2
NC_012225:1575432:157543215754321576235804Brachyspira hyodysenteriae WA1, complete genomeputative hydrolase2e-0962.8
NC_017238:427482:442458442458443300843Borrelia afzelii PKo chromosome, complete genomecof-like hydrolase family protein3e-0962.8
NC_008277:428926:443902443902444744843Borrelia afzelii PKo, complete genomehydrolase3e-0962.8
NC_017243:2190000:219815321981532198941789Brachyspira intermedia PWS/A chromosome, complete genomeHydrolase 3, haloacid dehalogenase-like hydrolase4e-0962.4
NC_017095:1927118:194641719464171947253837Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeHAD-superfamily hydrolase5e-0962
NC_013406:7024149:703855670385567039320765Paenibacillus sp. Y412MC10 chromosome, complete genomeCof-like hydrolase4e-0962
NC_015167:2700218:270148127014812702278798Cellulophaga lytica DSM 7489 chromosome, complete genomeCof-like hydrolase7e-0961.2
NC_006360:518808:517928517928518854927Mycoplasma hyopneumoniae 232, complete genomehypothetical protein7e-0961.2
NC_017243:2190000:219734521973452198130786Brachyspira intermedia PWS/A chromosome, complete genomeHydrolase 3, haloacid dehalogenase-like hydrolase8e-0961.2
NC_017259:25400:288672886729670804Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,sugar phosphatase1e-0860.8
NC_015844:3524175:352459535245953525401807Zobellia galactanivorans, complete genomeSugar phosphatase SupH9e-0960.8
NC_006156:427358:442357442357443196840Borrelia garinii PBi chromosome linear, complete sequencehydrolase2e-0860.1
NC_016610:61661:6247862478637101233Tannerella forsythia ATCC 43037 chromosome, complete genomecof family hydrolase2e-0860.1
NC_015875:1926981:1942882194288219442731392Streptococcus pseudopneumoniae IS7493 chromosome, complete genomeputative HAD superfamily hydrolase2e-0860.1
NC_014833:2225233:224586422458642246682819Ruminococcus albus 7 chromosome, complete genomeCof-like hydrolase3e-0859.3
NC_014551:2510000:255783325578332558252420Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein4e-0858.9
NC_015496:2279829:228584922858492286667819Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeCof-like hydrolase8e-0857.8
NC_010546:981363:985127985127985957831Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceprobable Haloacid dehalogenase-like hydrolase, type 39e-0857.8
NC_015577:786155:789315789315790178864Treponema azotonutricium ZAS-9 chromosome, complete genomephosphatase YidA9e-0857.4
NC_013171:1506500:150790715079071508734828Anaerococcus prevotii DSM 20548, complete genomeCof-like hydrolase2e-0756.6
NC_010001:986500:100537910053791006206828Clostridium phytofermentans ISDg, complete genomeCof-like hydrolase2e-0756.6
NC_015172:1621223:162676916267691627587819Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeCof-like hydrolase2e-0756.2
NC_013192:469771:492134492134492925792Leptotrichia buccalis DSM 1135, complete genomeCof-like hydrolase3e-0755.8
NC_014921:688978:6945756945756956481074Mycoplasma fermentans M64 chromosome, complete genomehypothetical protein4e-0755.5
NC_015638:23654:405224052241328807Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeCof-like hydrolase4e-0755.5
NC_017243:2778427:279515727951572795948792Brachyspira intermedia PWS/A chromosome, complete genomehydrolase, HAD superfamily6e-0755.1
NC_016052:842762:892192892192892680489Tetragenococcus halophilus NBRC 12172, complete genomeputative hydrolase9e-0754.3
NC_015921:425225:440198440198441010813Borrelia bissettii DN127 chromosome, complete genomecof-like hydrolase family protein8e-0754.3
NC_011601:846358:849698849698850513816Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein1e-0653.9
NC_020210:661236:680566680566681372807Geobacillus sp. GHH01, complete genomeputative Cof-like hydrolase2e-0652.8
NC_004545:15650:311893118931992804Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomeputative haloacid dehalogenase-like hydrolase3e-0652.4
NC_006055:183823:198431198431199270840Mesoplasma florum L1, complete genomecof-like hydrolase, HAD-superfamily5e-0652
NC_015214:1458480:146038814603881461197810Lactobacillus acidophilus 30SC chromosome, complete genomehypothetical protein6e-0651.6