Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3897119 Shigella flexneri 2a str. 301, complete genome

Start: 3897119, End: 3897616, Length: 498

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:3789696:378969637896963790226531Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-41169
NC_006511:3794017:379401737940173794547531Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-41169
NC_011083:4020000:402006640200664020596531Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,f1652e-41167
NC_016832:3798475:381662838166283817158531Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-41167
NC_003198:3824187:384234138423413842871531Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-41167
NC_004631:3809678:382783138278313828361531Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-41167
NC_011294:3880500:388051438805143881044531Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-41166
NC_011274:3799696:381784438178443818374531Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-41166
NC_003197:4005857:400585740058574006387531Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein4e-41166
NC_011080:3976441:397644139764413976971531Salmonella enterica subsp. enterica serovar Newport str. SL254,f1654e-41166
NC_011094:3887648:388764838876483888178531Salmonella enterica subsp. enterica serovar Schwarzengrund strf1657e-41166
NC_016810:4027170:402717040271704027700531Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-41166
NC_016831:3779611:379867537986753799205531Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein4e-41166
NC_016856:4019549:401954940195494020079531Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein4e-41166
NC_011205:4038884:403888440388844039414531Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-41166
NC_017046:4025998:402599840259984026528531Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-41166
NC_016863:3967156:396715639671563967686531Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein4e-41166
NC_016860:4110968:411096841109684111498531Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-41166
NC_016857:4025767:402717140271714027701531Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein4e-41166
NC_006905:3942753:394551239455123946042531Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-40164
NC_011149:3930358:393035839303583930888531Salmonella enterica subsp. enterica serovar Agona str. SL483,f1652e-40164
NC_011094:25762:4172241722429121191Salmonella enterica subsp. enterica serovar Schwarzengrund strchondroitin sulfate/heparin utilization regulation protein3e-1374.3
NC_006511:25796:4169241692428791188Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible sulfatase regulatory protein3e-1374.3
NC_011080:25751:4171741717429041188Salmonella enterica subsp. enterica serovar Newport str. SL254,chondroitin sulfate/heparin utilization regulation protein3e-1374.3
NC_011147:25836:4173241732429191188Salmonella enterica subsp. enterica serovar Paratyphi A strsulfatase regulatory protein3e-1374.3
NC_016860:25758:4172641726429131188Salmonella enterica subsp. enterica serovar Typhimurium strputative sulfatase regulator protein3e-1374.3
NC_011149:25760:4172341723429101188Salmonella enterica subsp. enterica serovar Agona str. SL483,chondroitin sulfate/heparin utilization regulation protein3e-1374.3
NC_003197:25803:4172341723429131191Salmonella typhimurium LT2, complete genomeputative arylsulfatase regulator4e-1373.9
NC_011205:25805:4172141721429111191Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853chondroitin sulfate/heparin utilization regulation protein4e-1373.9
NC_011274:25692:4160841608427981191Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91sulfatase regulatory protein4e-1373.9
NC_011294:25569:4147741477426671191Salmonella enterica subsp. enterica serovar Enteritidis strsulfatase regulatory protein4e-1373.9
NC_016810:25803:4172341723429131191Salmonella enterica subsp. enterica serovar Typhimurium strsulfatase regulatory protein4e-1373.9
NC_016831:25760:4172141721429111191Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative sulfatase regulatory protein4e-1373.9
NC_016856:25803:4172341723429131191Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative arylsulfatase regulator4e-1373.9
NC_016857:25803:4172341723429131191Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative arylsulfatase regulator4e-1373.9
NC_016863:25804:4172441724429141191Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative arylsulfatase regulator4e-1373.9
NC_017046:25758:4172341723429131191Salmonella enterica subsp. enterica serovar Typhimurium str. 798sulfatase regulatory protein4e-1373.9
NC_015164:1646753:1660453166045316616731221Bacteroides salanitronis DSM 18170 chromosome, complete genomeRadical SAM domain-containing protein4e-1063.9
NC_010102:25893:3738037380385761197Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0962
NC_016832:25807:4172341723429101188Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Chondroitin sulfate/heparin utilization regulation protein3e-0858.2
NC_004631:25807:4172041720429101191Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible sulfatase regulatory protein3e-0858.2
NC_003198:25807:4172041720429101191Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible sulfatase regulatory protein3e-0858.2
NC_010067:2881448:2884562288456228857881227Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0756.2
NC_009436:1648159:1662033166203316631781146Enterobacter sp. 638, complete genomeradical SAM protein3e-0754.3
NC_015424:2316228:2320639232063923219521314Aeromonas veronii B565 chromosome, complete genomeArylsulfatase regulator5e-0753.5
NC_014364:3238374:3252286325228632535541269Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeRadical SAM domain protein7e-0753.1