Query: NC_017160:1092839 Yersinia pestis D182038 chromosome, complete genome
Start: 1092839, End: 1127099, Length: 34261
Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_008150:513783 | 513783 | 549099 | 35317 | Yersinia pestis Antiqua, complete genome | 0 | 25780 | BLASTN svg | BLASTP svg |
NC_005810:3142384 | 3142384 | 3178945 | 36562 | Yersinia pestis biovar Microtus str. 91001, complete genome | 0 | 24810 | BLASTN svg | BLASTP svg |
NC_010465:1118147 | 1118147 | 1154230 | 36084 | Yersinia pseudotuberculosis YPIII, complete genome | 0 | 20560 | BLASTN svg | BLASTP svg |
NC_010159:3448490 | 3448490 | 3485409 | 36920 | Yersinia pestis Angola, complete genome | 0 | 20520 | BLASTN svg | BLASTP svg |
NC_008149:3373229 | 3373229 | 3409099 | 35871 | Yersinia pestis Nepal516, complete genome | 0 | 18530 | BLASTN svg | BLASTP svg |
NC_004088:3505383 | 3505383 | 3540559 | 35177 | Yersinia pestis KIM, complete genome | 0 | 18530 | BLASTN svg | BLASTP svg |
NC_003143:875367 | 875367 | 910535 | 35169 | Yersinia pestis CO92, complete genome | 0 | 18520 | BLASTN svg | BLASTP svg |
NC_010634:3509880 | 3509880 | 3546538 | 36659 | Yersinia pseudotuberculosis PB1/+, complete genome | 0 | 18140 | BLASTN svg | BLASTP svg |
NC_006155:3596120 | 3596120 | 3632778 | 36659 | Yersinia pseudotuberculosis IP 32953, complete genome | 0 | 18140 | BLASTN svg | BLASTP svg |
NC_015224:1067390 | 1067390 | 1106717 | 39328 | Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome, | 0 | 1092 | BLASTN svg | BLASTP svg |
NC_010067:2304313* | 2304313 | 2330599 | 26287 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 3e-90 | 341 | BLASTN svg | BLASTP svg |
CP002516:903241* | 903241 | 943308 | 40068 | Escherichia coli KO11, complete genome | 8e-20 | 107 | BLASTN svg | BLASTP svg |
NC_010468:906957* | 906957 | 948035 | 41079 | Escherichia coli ATCC 8739, complete genome | 8e-20 | 107 | BLASTN svg | BLASTP svg |
AC_000091:2976293 | 2976293 | 3008631 | 32339 | Escherichia coli W3110 DNA, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
CP002185:3167738* | 3167738 | 3207024 | 39287 | Escherichia coli W, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_000913:2975659* | 2975659 | 3006728 | 31070 | Escherichia coli K12, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_009800:2995958 | 2995958 | 3023384 | 27427 | Escherichia coli HS, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_010473:3069529* | 3069529 | 3100598 | 31070 | Escherichia coli str. K-12 substr. DH10B, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_012912:844339 | 844339 | 868005 | 23667 | Dickeya zeae Ech1591, complete genome | 7e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_005810:4045303 | 4045303 | 4068202 | 22900 | Yersinia pestis biovar Microtus str. 91001, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_004578:212468 | 212468 | 242099 | 29632 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007005:4810295 | 4810295 | 4836677 | 26383 | Pseudomonas syringae pv. syringae B728a, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |