Query: NC_010322:1336231 Pseudomonas putida GB-1 chromosome, complete genome
Start: 1336231, End: 1356023, Length: 19793
Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria
General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_015733:1943385* | 1943385 | 1961599 | 18215 | Pseudomonas putida S16 chromosome, complete genome | 0 | 1685 | BLASTN svg | BLASTP svg |
NC_002947:3404000 | 3404000 | 3428085 | 24086 | Pseudomonas putida KT2440, complete genome | 0 | 1372 | BLASTN svg | BLASTP svg |
NC_004129:2201780 | 2201780 | 2225354 | 23575 | Pseudomonas fluorescens Pf-5, complete genome | 7e-93 | 349 | BLASTN svg | BLASTP svg |
NC_004578:3849835 | 3849835 | 3872607 | 22773 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 2e-68 | 268 | BLASTN svg | BLASTP svg |
NC_010002:5111665* | 5111665 | 5134412 | 22748 | Delftia acidovorans SPH-1, complete genome | 7e-25 | 123 | BLASTN svg | BLASTP svg |
NC_012880:3421500* | 3421500 | 3457646 | 36147 | Dickeya dadantii Ech703, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_007908:1946902* | 1946902 | 1972325 | 25424 | Rhodoferax ferrireducens T118, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_003919:1491001 | 1491001 | 1512552 | 21552 | Xanthomonas axonopodis pv. citri str. 306, complete genome | 7e-19 | 103 | BLASTN svg | BLASTP svg |
NC_007508:1517393 | 1517393 | 1538575 | 21183 | Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome | 7e-19 | 103 | BLASTN svg | BLASTP svg |
NC_010725:4618000* | 4618000 | 4641047 | 23048 | Methylobacterium populi BJ001, complete genome | 7e-19 | 103 | BLASTN svg | BLASTP svg |
NC_014733:1857020 | 1857020 | 1894771 | 37752 | Methylovorus sp. MP688 chromosome, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_015563:4959843 | 4959843 | 4984667 | 24825 | Delftia sp. Cs1-4 chromosome, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_014562:2563466* | 2563466 | 2612484 | 49019 | Pantoea vagans C9-1 chromosome, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_010510:409469 | 409469 | 427758 | 18290 | Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_008781:1426285* | 1426285 | 1450593 | 24309 | Polaromonas naphthalenivorans CJ2, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_006511:2819128 | 2819128 | 2871000 | 51873 | Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_008767:2160000* | 2160000 | 2182371 | 22372 | Neisseria meningitidis FAM18, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010694:2971170* | 2971170 | 3003446 | 32277 | Erwinia tasmaniensis, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_015572:65597 | 65597 | 93052 | 27456 | Methylomonas methanica MC09 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_002946:1902642* | 1902642 | 1926583 | 23942 | Neisseria gonorrhoeae FA 1090, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_003197:3005842* | 3005842 | 3061627 | 55786 | Salmonella typhimurium LT2, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_004547:1174650* | 1174650 | 1211562 | 36913 | Erwinia carotovora subsp. atroseptica SCRI1043, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_006905:2987863 | 2987863 | 3008110 | 20248 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_010102:2967464 | 2967464 | 3022710 | 55247 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_011080:2982346 | 2982346 | 3036240 | 53895 | Salmonella enterica subsp. enterica serovar Newport str. SL254, | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_011083:3009760 | 3009760 | 3030112 | 20353 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_011149:2912219 | 2912219 | 2968148 | 55930 | Salmonella enterica subsp. enterica serovar Agona str. SL483, | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_015733:1398083 | 1398083 | 1423241 | 25159 | Pseudomonas putida S16 chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_009801:3013838 | 3013838 | 3044654 | 30817 | Escherichia coli E24377A, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_013961:851044* | 851044 | 884599 | 33556 | Erwinia amylovora, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008702:1094663* | 1094663 | 1118488 | 23826 | Azoarcus sp. BH72, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_014623:5350116 | 5350116 | 5370655 | 20540 | Stigmatella aurantiaca DW4/3-1 chromosome, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_004631:2872192 | 2872192 | 2894317 | 22126 | Salmonella enterica subsp. enterica serovar Typhi Ty2, complete | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_003198:2856596 | 2856596 | 2905974 | 49379 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 9e-06 | 60 | BLASTN svg | BLASTP svg |