Some Help

Query: NC_010322:1336231 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1336231, End: 1356023, Length: 19793

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015733:1943385*1943385196159918215Pseudomonas putida S16 chromosome, complete genome01685BLASTN svgBLASTP svg
NC_002947:34040003404000342808524086Pseudomonas putida KT2440, complete genome01372BLASTN svgBLASTP svg
NC_004129:22017802201780222535423575Pseudomonas fluorescens Pf-5, complete genome7e-93349BLASTN svgBLASTP svg
NC_004578:38498353849835387260722773Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-68268BLASTN svgBLASTP svg
NC_010002:5111665*5111665513441222748Delftia acidovorans SPH-1, complete genome7e-25123BLASTN svgBLASTP svg
NC_012880:3421500*3421500345764636147Dickeya dadantii Ech703, complete genome3e-21111BLASTN svgBLASTP svg
NC_007908:1946902*1946902197232525424Rhodoferax ferrireducens T118, complete genome3e-21111BLASTN svgBLASTP svg
NC_003919:14910011491001151255221552Xanthomonas axonopodis pv. citri str. 306, complete genome7e-19103BLASTN svgBLASTP svg
NC_007508:15173931517393153857521183Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome7e-19103BLASTN svgBLASTP svg
NC_010725:4618000*4618000464104723048Methylobacterium populi BJ001, complete genome7e-19103BLASTN svgBLASTP svg
NC_014733:18570201857020189477137752Methylovorus sp. MP688 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015563:49598434959843498466724825Delftia sp. Cs1-4 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_014562:2563466*2563466261248449019Pantoea vagans C9-1 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_010510:40946940946942775818290Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete4e-1487.7BLASTN svgBLASTP svg
NC_008781:1426285*1426285145059324309Polaromonas naphthalenivorans CJ2, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_006511:28191282819128287100051873Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-1075.8BLASTN svgBLASTP svg
NC_008767:2160000*2160000218237122372Neisseria meningitidis FAM18, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010694:2971170*2971170300344632277Erwinia tasmaniensis, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015572:65597655979305227456Methylomonas methanica MC09 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002946:1902642*1902642192658323942Neisseria gonorrhoeae FA 1090, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003197:3005842*3005842306162755786Salmonella typhimurium LT2, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004547:1174650*1174650121156236913Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006905:29878632987863300811020248Salmonella enterica subsp. enterica serovar Choleraesuis str1e-0869.9BLASTN svgBLASTP svg
NC_010102:29674642967464302271055247Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-0869.9BLASTN svgBLASTP svg
NC_011080:29823462982346303624053895Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-0869.9BLASTN svgBLASTP svg
NC_011083:30097603009760303011220353Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-0869.9BLASTN svgBLASTP svg
NC_011149:29122192912219296814855930Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-0869.9BLASTN svgBLASTP svg
NC_015733:13980831398083142324125159Pseudomonas putida S16 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009801:30138383013838304465430817Escherichia coli E24377A, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013961:851044*85104488459933556Erwinia amylovora, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008702:1094663*1094663111848823826Azoarcus sp. BH72, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014623:53501165350116537065520540Stigmatella aurantiaca DW4/3-1 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_004631:28721922872192289431722126Salmonella enterica subsp. enterica serovar Typhi Ty2, complete9e-0660BLASTN svgBLASTP svg
NC_003198:28565962856596290597449379Salmonella enterica subsp. enterica serovar Typhi str. CT18,9e-0660BLASTN svgBLASTP svg