Query: NC_009708:1131500 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome
Start: 1131500, End: 1165675, Length: 34176
Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_008150:513783 | 513783 | 549099 | 35317 | Yersinia pestis Antiqua, complete genome | 0 | 24980 | BLASTN svg | BLASTP svg |
NC_005810:3142384 | 3142384 | 3178945 | 36562 | Yersinia pestis biovar Microtus str. 91001, complete genome | 0 | 24080 | BLASTN svg | BLASTP svg |
NC_010465:1118147 | 1118147 | 1154230 | 36084 | Yersinia pseudotuberculosis YPIII, complete genome | 0 | 20410 | BLASTN svg | BLASTP svg |
NC_010159:3448490 | 3448490 | 3485409 | 36920 | Yersinia pestis Angola, complete genome | 0 | 20090 | BLASTN svg | BLASTP svg |
NC_004088:3505383 | 3505383 | 3540559 | 35177 | Yersinia pestis KIM, complete genome | 0 | 18100 | BLASTN svg | BLASTP svg |
NC_008149:3373229 | 3373229 | 3409099 | 35871 | Yersinia pestis Nepal516, complete genome | 0 | 18100 | BLASTN svg | BLASTP svg |
NC_003143:875367 | 875367 | 910535 | 35169 | Yersinia pestis CO92, complete genome | 0 | 18090 | BLASTN svg | BLASTP svg |
NC_010634:3509880 | 3509880 | 3546538 | 36659 | Yersinia pseudotuberculosis PB1/+, complete genome | 0 | 18020 | BLASTN svg | BLASTP svg |
NC_006155:3596120 | 3596120 | 3632778 | 36659 | Yersinia pseudotuberculosis IP 32953, complete genome | 0 | 18020 | BLASTN svg | BLASTP svg |
NC_015224:1067390 | 1067390 | 1106717 | 39328 | Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome, | 0 | 1098 | BLASTN svg | BLASTP svg |
NC_010067:2304313* | 2304313 | 2330599 | 26287 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 3e-90 | 341 | BLASTN svg | BLASTP svg |
NC_010468:906957* | 906957 | 948035 | 41079 | Escherichia coli ATCC 8739, complete genome | 3e-22 | 115 | BLASTN svg | BLASTP svg |
CP002516:903241* | 903241 | 943308 | 40068 | Escherichia coli KO11, complete genome | 3e-22 | 115 | BLASTN svg | BLASTP svg |
AC_000091:2976293 | 2976293 | 3008631 | 32339 | Escherichia coli W3110 DNA, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
CP002185:3167738* | 3167738 | 3207024 | 39287 | Escherichia coli W, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_000913:2975659* | 2975659 | 3006728 | 31070 | Escherichia coli K12, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_009800:2995958 | 2995958 | 3023384 | 27427 | Escherichia coli HS, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_010473:3069529* | 3069529 | 3100598 | 31070 | Escherichia coli str. K-12 substr. DH10B, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_012912:844339 | 844339 | 868005 | 23667 | Dickeya zeae Ech1591, complete genome | 7e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_007005:4810295 | 4810295 | 4836677 | 26383 | Pseudomonas syringae pv. syringae B728a, complete genome | 7e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_004578:212468 | 212468 | 242099 | 29632 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |