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Query: NC_009708:1131500 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

Start: 1131500, End: 1165675, Length: 34176

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008150:51378351378354909935317Yersinia pestis Antiqua, complete genome024980BLASTN svgBLASTP svg
NC_005810:31423843142384317894536562Yersinia pestis biovar Microtus str. 91001, complete genome024080BLASTN svgBLASTP svg
NC_010465:11181471118147115423036084Yersinia pseudotuberculosis YPIII, complete genome020410BLASTN svgBLASTP svg
NC_010159:34484903448490348540936920Yersinia pestis Angola, complete genome020090BLASTN svgBLASTP svg
NC_004088:35053833505383354055935177Yersinia pestis KIM, complete genome018100BLASTN svgBLASTP svg
NC_008149:33732293373229340909935871Yersinia pestis Nepal516, complete genome018100BLASTN svgBLASTP svg
NC_003143:87536787536791053535169Yersinia pestis CO92, complete genome018090BLASTN svgBLASTP svg
NC_010634:35098803509880354653836659Yersinia pseudotuberculosis PB1/+, complete genome018020BLASTN svgBLASTP svg
NC_006155:35961203596120363277836659Yersinia pseudotuberculosis IP 32953, complete genome018020BLASTN svgBLASTP svg
NC_015224:10673901067390110671739328Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,01098BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-90341BLASTN svgBLASTP svg
NC_010468:906957*90695794803541079Escherichia coli ATCC 8739, complete genome3e-22115BLASTN svgBLASTP svg
CP002516:903241*90324194330840068Escherichia coli KO11, complete genome3e-22115BLASTN svgBLASTP svg
AC_000091:29762932976293300863132339Escherichia coli W3110 DNA, complete genome2e-1489.7BLASTN svgBLASTP svg
CP002185:3167738*3167738320702439287Escherichia coli W, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_000913:2975659*2975659300672831070Escherichia coli K12, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_009800:29959582995958302338427427Escherichia coli HS, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_010473:3069529*3069529310059831070Escherichia coli str. K-12 substr. DH10B, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_012912:84433984433986800523667Dickeya zeae Ech1591, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_007005:48102954810295483667726383Pseudomonas syringae pv. syringae B728a, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_004578:21246821246824209929632Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-0765.9BLASTN svgBLASTP svg