Pre_GI: BLASTN Hits

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Query: NC_003063:2059311 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 2059311, End: 2088999, Length: 29689

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003305:112033020330Agrobacterium tumefaciens str. C58 chromosome linear, complete020390BLASTN svgBLASTP svg
NC_003063:30496230496233428329322Agrobacterium tumefaciens str. C58 chromosome linear, complete02545BLASTN svgBLASTP svg
NC_003305:17439391743939177259928661Agrobacterium tumefaciens str. C58 chromosome linear, complete02545BLASTN svgBLASTP svg
NC_003064:22535225354830925775Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence01324BLASTN svgBLASTP svg
NC_003306:22228222284809925872Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence01324BLASTN svgBLASTP svg
NC_012587:2326000*2326000234764221643Rhizobium sp. NGR234, complete genome0751BLASTN svgBLASTP svg
NC_012586:89714889714892110623959Rhizobium sp. NGR234 plasmid pNGR234b, complete sequence0658BLASTN svgBLASTP svg
NC_008686:1180388*1180388120659926212Paracoccus denitrificans PD1222 chromosome 1, complete sequence2e-50208BLASTN svgBLASTP svg
NC_003305:69381069381071549621687Agrobacterium tumefaciens str. C58 chromosome linear, complete1e-42182BLASTN svgBLASTP svg
NC_003063:13587381358738137982321086Agrobacterium tumefaciens str. C58 chromosome linear, complete1e-42182BLASTN svgBLASTP svg
NC_015976:10648881064888109285227965Sphingobium sp. SYK-6, complete genome3e-31145BLASTN svgBLASTP svg
NC_002678:57140005714000573684422845Mesorhizobium loti MAFF303099, complete genome1e-21113BLASTN svgBLASTP svg
NC_002678:48591114859111488349624386Mesorhizobium loti MAFF303099, complete genome1e-21113BLASTN svgBLASTP svg
NC_003911:253400*25340027913725738Silicibacter pomeroyi DSS-3, complete genome2e-20109BLASTN svgBLASTP svg
NC_015675:2567000*2567000258988822889Mesorhizobium opportunistum WSM2075 chromosome, complete genome3e-19105BLASTN svgBLASTP svg
NC_019973:2417000*2417000243959922600Mesorhizobium australicum WSM2073, complete genome1e-18103BLASTN svgBLASTP svg
NC_014923:2439197*2439197246272623530Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete1e-18103BLASTN svgBLASTP svg
NC_010524:93319193319195763824448Leptothrix cholodnii SP-6, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_014363:16805781680578170738226805Olsenella uli DSM 7084 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_007492:29940362994036302311329078Pseudomonas fluorescens PfO-1, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_007760:47510004751000477056419565Anaeromyxobacter dehalogenans 2CP-C, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_003047:33600003360000341859958600Sinorhizobium meliloti 1021, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014323:38953763895376391522819853Herbaspirillum seropedicae SmR1 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_008043:499399*49939952304123643Silicibacter sp. TM1040 mega plasmid, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_005810:40453034045303406820222900Yersinia pestis biovar Microtus str. 91001, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_008027:2051821*2051821207333821518Pseudomonas entomophila L48, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_013510:517878*51787856251444637Thermomonospora curvata DSM 43183, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014165:25330402533040256380530766Thermobispora bispora DSM 43833 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012586:92209592209594950427410Rhizobium sp. NGR234 plasmid pNGR234b, complete sequence6e-0867.9BLASTN svgBLASTP svg
NC_012724:19147401914740194049525756Burkholderia glumae BGR1 chromosome 1, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_020260:33558143355814338153125718Cronobacter sakazakii Sp291, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_018750:4311300*4311300432914617847Streptomyces venezuelae ATCC 10712, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014844:659829*65982970618546357Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011145:47975484797548481912621579Anaeromyxobacter sp. K, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007005:5367454*5367454539426326810Pseudomonas syringae pv. syringae B728a, complete genome3e-0661.9BLASTN svgBLASTP svg