Pre_GI Gene

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Host: NC_003305 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003305:693810 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6922336938131581hypothetical proteinBLASTP
6938106949191110hypothetical proteinBLASTP
6949336971972265vgrG proteinQuickGO ontologyBLASTP
697327698262936hypothetical proteinBLASTP
698490698945456hypothetical protein
699064699471408hypothetical protein
699468699893426hypothetical proteinBLASTP
700024700269246hypothetical protein
700619700906288hypothetical proteinBLASTP
700907701233327hypothetical proteinBLASTP
701389701964576hypothetical proteinBLASTP
702035702901867hypothetical proteinBLASTP
702991703881891hypothetical proteinBLASTP
703929704165237hypothetical protein
704719705234516hypothetical proteinBLASTP
705643706137495antioxidant enzymeQuickGO ontologyBLASTP
706318706704387acetyltransferaseQuickGO ontologyBLASTP
706973707221249hypothetical proteinBLASTP
7074847085691086transcriptional regulator MerR familyQuickGO ontologyBLASTP
708637708834198hypothetical protein
708851709108258hypothetical protein
709078709800723hypothetical proteinBLASTP
7105297119621434hypothetical proteinBLASTP
712189712611423hypothetical proteinBLASTP
712786713757972epoxide hydrolaseQuickGO ontologyBLASTP
714030714776747short-chain dehydrogenaseQuickGO ontologyBLASTP
715038715496459hypothetical proteinBLASTP