Pre_GI Gene

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Host: NC_003063 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003063:1358738 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
13587381359205468aspartate 1-decarboxylase precursorQuickGO ontologyBLASTP
13592601359718459hypothetical proteinBLASTP
13597311359910180hypothetical protein
13599801360726747hypothetical proteinBLASTP
136099913620811083hypothetical proteinBLASTP
13620851362567483hypothetical proteinBLASTP
136279413644041611hypothetical proteinBLASTP
13649561365678723hypothetical proteinBLASTP
13665501366735186hypothetical protein
13675351367783249hypothetical proteinBLASTP
13680521368438387hypothetical proteinBLASTP
13686191369191573hypothetical proteinBLASTP
13693631370037675hypothetical proteinBLASTP
13708751371765891hypothetical proteinBLASTP
13718551372721867hypothetical proteinBLASTP
13727921373439648hypothetical proteinBLASTP
13734991373690192hypothetical protein
13738501374137288hypothetical proteinBLASTP
13748631375288426hypothetical proteinBLASTP
13758181376117300hypothetical protein
13764941377429936hypothetical proteinBLASTP
137761313798232211hypothetical proteinBLASTP