Pre_GI: BLASTP Hits

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Query: NC_017328:2785309:2807115 Shigella flexneri 2002017 chromosome, complete genome

Start: 2807115, End: 2807777, Length: 663

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:2747917:276823327682332768895663Shigella flexneri 2a str. 301, complete genomeputative transcriptional regulator1e-126452
NC_004741:2741971:276286927628692763531663Shigella flexneri 2a str. 2457T, complete genomeputative transcriptional regulator1e-126452
AC_000091:2747520:279433027943302794992663Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional dual regulator4e-125447
NC_010498:2847359:286928928692892869951663Escherichia coli SMS-3-5, complete genomegab operon transcriptional repressor CsiR4e-125447
AP010958:3238742:325819932581993258861663Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional dual regulator CsiR4e-125447
NC_010473:2839902:288546128854612886123663Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional dual regulator4e-125447
CP002185:2919752:294178929417892942451663Escherichia coli W, complete genomeDNA-binding transcriptional dual regulator4e-125447
NC_000913:2746886:279369627936962794358663Escherichia coli K12, complete genomeDNA-binding transcriptional dual regulator4e-125447
NC_007384:2933625:295532129553212956001681Shigella sonnei Ss046, complete genomeputative transcriptional regulator4e-125447
NC_012759:2633949:267950826795082680170663Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional regulator CsiR4e-125447
NC_016822:3065426:308750330875033088165663Shigella sonnei 53G, complete genomeDNA-binding transcriptional regulator CsiR4e-125447
NC_013364:3339768:335928833592883359950663Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional dual regulator CsiR4e-125447
NC_013361:3651150:367411436741143674776663Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator CsiR4e-125447
NC_013353:3238742:325819932581993258861663Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional dual regulator CsiR4e-125447
NC_012967:2669182:269042726904272691089663Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional regulator CsiR4e-125447
NC_011601:2998326:302153730215373022199663Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding transcriptional regulator CsiR1e-124445
NC_011750:2928990:296321029632102963872663Escherichia coli IAI39 chromosome, complete genomeDNA-binding transcriptional regulator CsiR1e-124445
NC_011742:2863316:288287128828712883533663Escherichia coli S88 chromosome, complete genomeDNA-binding transcriptional regulator CsiR3e-124444
NC_008563:2946391:296554229655422966222681Escherichia coli APEC O1, complete genomeputative transcriptional regulator YgaE4e-124443
CU928160:2818750:284058328405832841245663Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional dual regulator2e-123441
NC_011741:2818750:284058328405832841245663Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional regulator CsiR2e-123441
NC_007963:2232000:225526422552642255944681Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family1e-68259
NC_011004:4183993:422052942205294221239711Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, GntR family9e-28123
NC_008391:1210451:123699212369921237723732Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, GntR family1e-23109
NC_016147:1825827:183168018316801832387708Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator2e-2099.4
NC_015957:5082172:509492150949215095619699Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator9e-1683.6
NC_004463:1369165:139094013909401391659720Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein3e-1375.1
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR2e-1169.3
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR2e-1169.3
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family6e-1167.4
NC_013739:2106662:212626421262642127019756Conexibacter woesei DSM 14684, complete genometranscriptional regulator, GntR family1e-1066.2
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator7e-1063.9
NC_016642:2440070:247139724713972472071675Pseudovibrio sp. FO-BEG1 chromosome, complete genomeGntR family transcriptional regulator8e-1063.9
NC_012108:3824977:383239938323993833073675Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (GntR family protein)1e-0963.5
NC_010175:3712456:372623837262383726933696Chloroflexus aurantiacus J-10-fl, complete genomeGntR domain protein2e-0962.4
NC_004463:2262467:226446822644682265103636Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein7e-0960.8
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR9e-0960.5
NC_014394:93344:110272110272110943672Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, GntR family1e-0860.1
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator2e-0859.7
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator3e-0858.5
NC_015554:4002952:401532540153254016101777Alteromonas sp. SN2 chromosome, complete genomeGntR family transcriptional regulator5e-0858.2
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family5e-0858.2
NC_013173:2261396:227212122721212272783663Desulfomicrobium baculatum DSM 4028, complete genometranscriptional regulator, GntR family4e-0858.2
NC_008209:1385094:140394714039471404594648Roseobacter denitrificans OCh 114, complete genomeGntR-family transcription regulator, putative5e-0857.8
NC_014815:4621552:465611546561154656822708Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family8e-0857.4
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family9e-0857
NC_015594:410454:433254433254433979726Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR family transcriptional regulator1e-0756.6
NC_018515:937994:937994937994938674681Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator2e-0756.2
NC_015145:3657103:367579336757933676560768Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator2e-0755.8
NC_016906:4123000:412848441284844129173690Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator3e-0755.5
NC_009664:4423829:451763545176354518357723Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, GntR family4e-0755.1
NC_013740:2218215:222773122277312228360630Acidaminococcus fermentans DSM 20731, complete genometranscriptional regulator, GntR family3e-0755.1
NC_011959:131800:135215135215135898684Thermomicrobium roseum DSM 5159, complete genomeGntR-family transcriptional regulator5e-0754.7
NC_017275:927814:944351944351944989639Sulfolobus islandicus HVE10/4 chromosome, complete genomeGntR family transcriptional regulator5e-0754.7
NC_014098:2971011:297882229788222979547726Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family6e-0754.3
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein6e-0754.3
NC_014841:131308:133188133188133841654Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetranscriptional regulator, GntR family7e-0754.3
NC_002754:1061851:108024710802471080885639Sulfolobus solfataricus P2, complete genomeTranscriptional regulator1e-0653.5
NC_004193:2921103:293098429309842931643660Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator2e-0653.1
NC_011830:2177187:220439422043942205059666Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family1e-0653.1
NC_011892:352652:367122367122367793672Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completetranscriptional regulator, GntR family1e-0653.1
NC_008148:2231045:227183422718342272532699Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family1e-0653.1
NC_013947:5546315:554851655485165549172657Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family1e-0653.1
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator2e-0652.8
NC_014640:5897421:590216059021605902852693Achromobacter xylosoxidans A8 chromosome, complete genomeGntR family transcriptional regulator2e-0652.8
NC_002578:1434396:144095614409561441609654Thermoplasma acidophilum DSM 1728, complete genomeNta operon transcriptional regulator related protein3e-0652.4
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein3e-0652
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family3e-0652
NC_012522:3038890:304323930432393043943705Rhodococcus opacus B4, complete genomeputative GntR family transcriptional regulator4e-0651.6
NC_016584:2244966:226257722625772263257681Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator4e-0651.6
NC_009937:412302:415716415716416384669Azorhizobium caulinodans ORS 571, complete genomeGntR family transcriptional regulator6e-0651.2
NC_019791:1272850:130005613000561300721666Caldisphaera lagunensis DSM 15908 chromosome, complete genometranscriptional regulator5e-0651.2
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator5e-0651.2
NC_008380:4078670:408035540803554081065711Rhizobium leguminosarum bv. viciae 3841, complete genomeputative GntR family transcriptional regulator6e-0650.8
NC_006582:883922:909551909551910216666Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family7e-0650.8
NC_008596:3404832:342173434217343422429696Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein7e-0650.8
NC_015458:2441435:246138524613852462053669Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator9e-0650.4
NC_002947:4931476:493700649370064937698693Pseudomonas putida KT2440, complete genometranscriptional regulator, GntR family9e-0650.4
NC_010170:3908500:393514939351493935682534Bordetella petrii, complete genometranscriptional regulator9e-0650.4
NC_014258:42262:767237672377397675Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional regulator9e-0650.4
NC_010501:4080937:408689040868904087633744Pseudomonas putida W619, complete genometranscriptional regulator, GntR family9e-0650.4
NC_013093:2633000:263436726343672635044678Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family1e-0550.4