Pre_GI: BLASTP Hits

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Query: NC_016822:3282654:3294806 Shigella sonnei 53G, complete genome

Start: 3294806, End: 3295141, Length: 336

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011415:3217796:322727732272773228086810Escherichia coli SE11 chromosome, complete genomeputative transcriptional regulator1e-62238
AP010958:3474077:348355834835583484367810Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transcriptional regulator1e-62238
NC_013353:3474077:348355834835583484367810Escherichia coli O103:H2 str. 12009, complete genometranscriptional regulator1e-62238
CU928160:3030324:303980530398053040614810Escherichia coli IAI1 chromosome, complete genomeputative transcriptional regulator1e-62238
NC_009801:3175714:318519531851953186004810Escherichia coli E24377A, complete genometranscriptional regulatory protein, C terminal1e-62238
CP002185:3167738:317860331786033179412810Escherichia coli W, complete genomepredicted transcriptional regulator1e-62238
CP002516:903241:926665926665927474810Escherichia coli KO11, complete genometranscriptional regulator, CadC1e-62238
NC_011741:3030324:303980530398053040614810Escherichia coli IAI1 chromosome, complete genomeputative transcriptional regulator1e-62238
NC_013361:3867558:387703938770393877848810Escherichia coli O26:H11 str. 11368 chromosome, complete genometranscriptional regulator1e-62238
NC_013364:3552284:356177135617713562580810Escherichia coli O111:H- str. 11128, complete genomeputative transcriptional regulator1e-62238
NC_016902:903241:926665926665927474810Escherichia coli KO11FL chromosome, complete genometranscriptional regulator CadC1e-62238
NC_009800:2995958:300682330068233007632810Escherichia coli HS, complete genometranscriptional regulatory protein, C terminal5e-62236
NC_010468:906957:931392931392932201810Escherichia coli ATCC 8739, complete genometranscriptional regulator, CadC5e-62236
AC_000091:2976293:298715829871582987967810Escherichia coli W3110 DNA, complete genomepredicted transcriptional regulator4e-62236
NC_010473:3069529:308039430803943081203810Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transcriptional regulator4e-62236
NC_000913:2975659:298652429865242987333810Escherichia coli K12, complete genomepredicted transcriptional regulator4e-62236
NC_012759:2862807:287367228736722874481810Escherichia coli BW2952 chromosome, complete genomeputative transcriptional regulator4e-62236
CU928145:3196173:320565432056543206463810Escherichia coli 55989 chromosome, complete genomeputative transcriptional regulator3e-62236
NC_011748:3196173:320565432056543206463810Escherichia coli 55989, complete genomeputative transcriptional regulator3e-62236
NC_002695:3702344:371090337109033711712810Escherichia coli O157:H7 str. Sakai, complete genomeputative sensory transducer1e-61234
NC_011353:3805819:381530038153003816109810Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator1e-61234
NC_013008:3761467:377002637700263770835810Escherichia coli O157:H7 str. TW14359 chromosome, complete genometranscriptional regulator1e-61234
NC_013941:3540420:354897935489793549788810Escherichia coli O55:H7 str. CB9615 chromosome, complete genomesensory transducer1e-61234
NC_002655:3769643:377820237782023779011810Escherichia coli O157:H7 EDL933, complete genomeputative sensory transducer1e-60231
NC_011750:3407500:341703634170363417845810Escherichia coli IAI39 chromosome, complete genomeputative transcriptional regulator2e-60230
NC_011751:3285646:329512932951293295938810Escherichia coli UMN026 chromosome, complete genomeputative transcriptional regulator2e-60230
NC_009648:293052:307297307297308121825Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative sensory transducer2e-2097.8
NC_011149:3863913:388269238826923883456765Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulatory protein, C4e-1580.1
NC_016860:3964000:398109439810943981858765Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional regulator C4e-1580.1
NC_016863:3905875:391949739194973920354858Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator4e-1580.1
NC_012125:3879917:389149138914913892279789Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator4e-1579.7
NC_016832:3858815:386464338646433864978336Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Transcriptional regulatory protein, C6e-1579.3
NC_014618:2989000:299825829982582999097840Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator CadC8e-1475.9