Pre_GI: BLASTP Hits

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Query: NC_016822:1781644:1788523 Shigella sonnei 53G, complete genome

Start: 1788523, End: 1788720, Length: 198

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1696831:170556517055651705762198Shigella sonnei Ss046, complete genomehypothetical protein7e-22102
NC_002695:2091890:210500721050072105204198Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-21100
NC_002655:1966464:198326819832681983465198Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-21100
NC_013941:1894496:190930519093051909502198Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeTwo-component-system connector protein yneN3e-21100
NC_011748:1684777:169613216961321696329198Escherichia coli 55989, complete genomehypothetical protein3e-21100
NC_008253:1534840:154619615461961546393198Escherichia coli 536, complete genomehypothetical protein3e-21100
NC_007613:1533024:154293615429361543133198Shigella boydii Sb227, complete genomehypothetical protein3e-21100
AP010958:1711656:172646617264661726663198Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein3e-21100
CP002516:2395578:241296924129692413166198Escherichia coli KO11, complete genomehypothetical protein3e-21100
CP002185:1681327:169268216926821692879198Escherichia coli W, complete genomesmall membrane protein3e-21100
CU928145:1684777:169613216961321696329198Escherichia coli 55989 chromosome, complete genomeConserved hypothetical protein3e-21100
NC_016902:2395578:241296924129692413166198Escherichia coli KO11FL chromosome, complete genomehypothetical protein3e-21100
NC_013364:1902761:191756919175691917766198Escherichia coli O111:H- str. 11128, complete genomehypothetical protein3e-21100
NC_013361:2047170:206197820619782062175198Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein3e-21100
NC_013353:1711656:172646617264661726663198Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-21100
NC_011741:1579375:159073015907301590927198Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-21100
NC_004431:1754627:176943517694351769632198Escherichia coli CFT073, complete genomehypothetical protein3e-21100
CU928160:1579375:159073015907301590927198Escherichia coli IAI1 chromosome, complete genomeConserved hypothetical protein3e-21100
NC_011415:1669484:168083916808391681036198Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-2198.6
NC_011750:1849561:186091818609181861115198Escherichia coli IAI39 chromosome, complete genomehypothetical protein9e-2198.6
NC_007606:1515403:152273415227341522931198Shigella dysenteriae Sd197, complete genomehypothetical protein2e-2097.8
NC_011742:1574036:158539115853911585588198Escherichia coli S88 chromosome, complete genomehypothetical protein5e-2096.3
NC_007946:1632025:164338016433801643577198Escherichia coli UTI89, complete genomehypothetical protein5e-2096.3
NC_011751:1770376:178173217817321781965234Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-1995.1
NC_011601:1675000:168640816864081686605198Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein1e-1995.1
NC_010498:1659328:166817916681791668376198Escherichia coli SMS-3-5, complete genomehypothetical protein2e-1994.4
NC_010468:2345781:235990723599072360104198Escherichia coli ATCC 8739, complete genomehypothetical protein1e-1892
NC_012759:1462490:147384514738451474042198Escherichia coli BW2952 chromosome, complete genometwo component system connector membrane protein, EvgSA to PhoQP1e-1892
NC_012947:2228235:224294322429432243140198Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-1892
NC_012967:1546000:155771315577131557910198Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-1892
NC_011353:2004800:201960820196082019790183Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-1891.7