Pre_GI: BLASTP Hits

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Query: NC_016822:15401:18159 Shigella sonnei 53G, complete genome

Start: 18159, End: 18314, Length: 156

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011750:3545466:356015035601503561118969Escherichia coli IAI39 chromosome, complete genome7e-24108
NC_016822:3946500:3949797394979739509691173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA9e-24108
NC_016822:1431200:1448391144839114495631173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA9e-24108
NC_016822:1304398:1323567132356713247391173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA9e-24108
NC_007384:16500:1792117921190931173Shigella sonnei Ss046, complete genomeIS21 ORF19e-24108
NC_007384:1320287:1339949133994913411211173Shigella sonnei Ss046, complete genomeIS21 ORF19e-24108
NC_007384:1696831:169992616999261700405480Shigella sonnei Ss046, complete genomeIS21 ORF13e-23107
NC_009801:2898426:2926464292646429276361173Escherichia coli E24377A, complete genometransposase, IS21 family6e-2199.4
NC_009801:995396:1011492101149210126641173Escherichia coli E24377A, complete genometransposase, IS21 family6e-2199.4
NC_009801:3374501:3391753339175333929251173Escherichia coli E24377A, complete genometransposase, IS21 family6e-2199.4
NC_007384:3741708:3758338375833837594591122Shigella sonnei Ss046, complete genomeIS21 ORF13e-1477
NC_007607:87000:1212281212281223431116Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase1e-1271.6
NC_010660:86445:9194091940930551116Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceputative transposase9e-1268.9