Pre_GI: BLASTP Hits

Some Help

Query: NC_016822:15401:15401 Shigella sonnei 53G, complete genome

Start: 15401, End: 15610, Length: 210

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:4081484:409501340950134095222210Escherichia coli KO11FL chromosome, complete genomeHok/gef cell toxic protein7e-33139
CP002516:4081484:409501340950134095222210Escherichia coli KO11, complete genomeHok/gef cell toxic protein7e-33139
NC_009800:12162:167501675016959210Escherichia coli HS, complete genomeputative Hok/gef family protein7e-33139
CU928160:11381:154011540115610210Escherichia coli IAI1 chromosome, complete genomeregulatory protein for HokC, overlaps CDS of hokC7e-33139
NC_011415:11381:154011540115610210Escherichia coli SE11 chromosome, complete genomephage maintenance protein7e-33139
NC_011741:11381:154011540115610210Escherichia coli IAI1 chromosome, complete genomeregulatory protein for HokC, overlaps CDS of hokC7e-33139
NC_012967:12161:167491674916901153Escherichia coli B str. REL606 chromosome, complete genomesmall toxic membrane polypeptide7e-33139
NC_013353:12660:166801668016832153Escherichia coli O103:H2 str. 12009, complete genomesmall toxic membrane peptide HokC7e-33139
NC_013361:11382:154021540215554153Escherichia coli O26:H11 str. 11368 chromosome, complete genomesmall toxic membrane peptide HokC7e-33139
NC_013364:11382:153871538715539153Escherichia coli O111:H- str. 11128, complete genomesmall toxic membrane peptide HokC7e-33139
NC_013008:11938:154191541915628210Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulatory peptide2e-32137
NC_002695:12000:154191541915628210Escherichia coli O157:H7 str. Sakai, complete genomeGef2e-32137
NC_002655:12000:154191541915628210Escherichia coli O157:H7 EDL933, complete genomeGef protein interferes with membrane function when in excess9e-32135
NC_013941:12000:154011540115610210Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeGef protein9e-32135
NC_012947:2189533:219110321911032191315213Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeHok/gef cell toxic protein6e-22102
AP010958:12660:166801668016832153Escherichia coli O103:H2 str. 12009 DNA, complete genomesmall toxic membrane peptide HokC4e-21100
CP002185:11921:166801668016832153Escherichia coli W, complete genometoxic membrane protein, small4e-21100
NC_012947:3753375:376682137668213766973153Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeHok/gef cell toxic protein4e-21100
NC_012967:12161:167491674916901153Escherichia coli B str. REL606 chromosome, complete genomesmall toxic membrane polypeptide4e-21100
NC_013353:12660:166801668016832153Escherichia coli O103:H2 str. 12009, complete genomesmall toxic membrane peptide HokC4e-21100
NC_013361:11382:154021540215554153Escherichia coli O26:H11 str. 11368 chromosome, complete genomesmall toxic membrane peptide HokC4e-21100
NC_013364:11382:153871538715539153Escherichia coli O111:H- str. 11128, complete genomesmall toxic membrane peptide HokC4e-21100
NC_011294:1465500:147563914756391475851213Salmonella enterica subsp. enterica serovar Enteritidis strregulator of hokC3e-21100
NC_010468:3970995:398539839853983985550153Escherichia coli ATCC 8739, complete genomeHok/gef cell toxic protein1e-2098.2
NC_011353:12000:154191541915571153Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeHok/gef family protein1e-2098.2
NC_011601:1269500:128249312824931282687195Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome6e-1889.4
CP002516:2305659:232058723205872320742156Escherichia coli KO11, complete genome5e-1786.3
AC_000091:1627049:164683316468331646988156Escherichia coli W3110 DNA, complete genomesmall toxic polypeptide5e-1786.3
NC_000913:1625500:164314316431431643298156Escherichia coli K12, complete genomeQin prophage; small toxic polypeptide5e-1786.3
NC_010468:2265423:227753022775302277685156Escherichia coli ATCC 8739, complete genomeHok/gef cell toxic protein5e-1786.3
CP002185:1770815:178511417851141785269156Escherichia coli W, complete genomeQin prophage; small toxic polypeptide5e-1786.3
NC_010473:1712984:173276817327681732923156Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; small toxic polypeptide5e-1786.3
NC_012759:1517500:153520215352021535357156Escherichia coli BW2952 chromosome, complete genomeQin prophage; small toxic polypeptide5e-1786.3
NC_013361:2138716:215419321541932154348156Escherichia coli O26:H11 str. 11368 chromosome, complete genomeprophage maintenance protein5e-1786.3
NC_016902:2305659:232058723205872320742156Escherichia coli KO11FL chromosome, complete genome5e-1786.3
NC_016902:2580774:258988825898882590043156Escherichia coli KO11FL chromosome, complete genomeHok/gef cell toxic protein9e-1682
NC_003198:1908238:191738919173891917544156Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-1682
CP002516:2580774:258988825898882590043156Escherichia coli KO11, complete genomeHok/gef cell toxic protein9e-1682
NC_020063:2449554:246186024618602462015156Enterobacteriaceae bacterium strain FGI 57, complete genomeHok/gef family1e-1271.6
NC_020063:2343813:235479323547932354948156Enterobacteriaceae bacterium strain FGI 57, complete genomeHok/gef family7e-1165.9