Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1486005 Shigella sonnei 53G, complete genome

Start: 1486005, End: 1486646, Length: 642

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:2514544:251557025155702516211642Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completepyrazinamidase/nicotinamidase2e-106384
NC_004088:2366000:239016323901632390810648Yersinia pestis KIM, complete genomehypothetical protein1e-72272
NC_017047:2260118:229055822905582291187630Rahnella aquatilis HX2 chromosome, complete genomenicotinamidase/pyrazinamidase3e-69261
NC_015966:2337833:234975223497522350384633Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeNicotinamidase7e-46183
NC_013501:931418:938168938168938800633Rhodothermus marinus DSM 4252, complete genomeNicotinamidase8e-46183
NC_014011:1264165:127181812718181272399582Aminobacterium colombiense DSM 12261 chromosome, complete genomeNicotinamidase1e-42172
NC_019907:773944:788699788699789325627Liberibacter crescens BT-1 chromosome, complete genomenicotinamidase4e-42171
NC_008390:2058500:207873620787362079368633Burkholderia cepacia AMMD chromosome 1, complete sequenceNicotinamidase6e-38157
NC_010551:2007926:202804620280462028678633Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceNicotinamidase3e-37154
NC_015947:223184:239980239980240606627Burkholderia sp. JV3 chromosome, complete genomeNicotinamidase2e-36152
NC_013960:1587761:161487716148771615536660Nitrosococcus halophilus Nc4 chromosome, complete genomeNicotinamidase2e-34145
NC_007484:293763:299700299700300365666Nitrosococcus oceani ATCC 19707, complete genomeNicotinamidase4e-34144
NC_000961:888000:907656907656908198543Pyrococcus horikoshii OT3, complete genomepyrazinamidase/nicotinamidase1e-31136
NC_015680:369777:378690378690379235546Pyrococcus yayanosii CH1 chromosome, complete genomepyrazinamidase/nicotinamidase2e-30132
NC_007633:988000:994986994986995486501Mycoplasma capricolum subsp. capricolum ATCC 27343, completepyrazinamidase/nicotinamidase8e-22103
NC_015416:1478775:149959714995971500223627Methanosaeta concilii GP-6 chromosome, complete genomeisochorismatase family protein5e-2097.8
NC_017243:1323870:132656613265661327207642Brachyspira intermedia PWS/A chromosome, complete genomebifunctional pyrazinamidase/nicotinamidase3e-1995.1
NC_012225:236490:236490236490237131642Brachyspira hyodysenteriae WA1, complete genomebifunctional pyrazinamidase/nicotinamidase3e-1994.7
NC_010572:8493946:851161385116138512206594Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative nicotinamidase5e-1890.9
NC_010572:33724:337243372434317594Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative nicotinamidase5e-1890.9
NC_014330:337546:356596356596357237642Brachyspira pilosicoli 95/1000 chromosome, complete genomebifunctional pyrazinamidase nicotinamidase1e-1789.7
NC_013170:917177:925423925423926001579Cryptobacterium curtum DSM 15641, complete genomenicotinamidase-like amidase7e-1787
NC_013939:1417750:142337214233721423887516Deferribacter desulfuricans SSM1, complete genomeisochorismatase hydrolase1e-1686.7
NC_015320:743983:743983743983744516534Archaeoglobus veneficus SNP6 chromosome, complete genomeisochorismatase hydrolase2e-1685.5
NC_014246:496976:514764514764515360597Mobiluncus curtisii ATCC 43063 chromosome, complete genomeputative nicotinamidase4e-1684.7
NC_012563:1348500:135031813503181350878561Clostridium botulinum A2 str. Kyoto, complete genomepncA family protein7e-1477.4
NC_017297:1280963:128096312809631281523561Clostridium botulinum F str. 230613 chromosome, complete genomeisochorismatase family protein1e-1376.6
NC_014328:2518081:253877925387792539345567Clostridium ljungdahlii ATCC 49587 chromosome, complete genomenicotinamidase2e-1272.8
NC_008767:2160000:217562521756252176260636Neisseria meningitidis FAM18, complete genomeputative nicotinamidase1e-1170.1
NC_017516:2220000:223503722350372235672636Neisseria meningitidis H44/76 chromosome, complete genomeisochorismatase family protein1e-1170.1
NC_017512:2209000:222152522215252222160636Neisseria meningitidis WUE 2594, complete genomeputative nicotinamidase (nicotine deamidase; NAMase)1e-1066.6
NC_017511:1812000:182527118252711825906636Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeprotein PncA2e-1065.9
NC_011035:1908000:192142819214281922063636Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeprotein PncA2e-1065.9
NC_002946:1902642:191054719105471911182636Neisseria gonorrhoeae FA 1090, complete genomePncA2e-1065.9
NC_010741:745357:765689765689766525837Treponema pallidum subsp. pallidum SS14, complete genomepossible nicotinamidase4e-1064.7
NC_000919:746875:764241764241765077837Treponema pallidum subsp. pallidum str. Nichols, complete genomenicotinamidase, putative4e-1064.7
NC_016844:748117:766178766178767014837Treponema pallidum subsp. pallidum DAL-1 chromosome, completeputative nicotinamidase4e-1064.7
NC_021508:745388:765720765720766556837Treponema pallidum subsp. pallidum SS14, complete genomeputative nicotinamidase4e-1064.7
NC_016842:748419:765824765824766660837Treponema pallidum subsp. pertenue str. SamoaD chromosome, completeputative nicotinamidase4e-1064.7
NC_016843:747950:766011766011766847837Treponema pallidum subsp. pertenue str. Gauthier chromosome,putative nicotinamidase4e-1064.7
NC_016848:748873:766278766278767114837Treponema pallidum subsp. pertenue str. CDC2 chromosome, completeputative nicotinamidase4e-1064.7
NC_017268:747429:765490765490766386897Treponema pallidum subsp. pallidum str. Chicago chromosome,nicotinamidase, putative4e-1064.7
NC_015714:741044:759105759105759941837Treponema paraluiscuniculi Cuniculi A chromosome, complete genomeputative nicotinamidase8e-1063.9
NC_010723:3499291:350750535075053508071567Clostridium botulinum E3 str. Alaska E43, complete genomeisochorismatase family protein5e-0961.2
NC_013504:1388480:140523214052321405777546Lactobacillus johnsonii FI9785 chromosome, complete genomehypothetical protein7e-0960.5
NC_011146:603429:616644616644617297654Geobacter bemidjiensis Bem, complete genomeisochorismatase hydrolase3e-0858.9
NC_002689:770326:787296787296787823528Thermoplasma volcanium GSS1, complete genomeAmidase (nicotinamidase-related)5e-0857.8
NC_000964:521975:552159552159552701543Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-0756.6
NC_011961:528837:538092538092538706615Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequenceisochorismatase hydrolase1e-0756.6
NC_021150:68251:801248012480687564Azotobacter vinelandii CA6, complete genomeIsochorismatase hydrolase5e-0754.7
NC_012560:68251:801248012480687564Azotobacter vinelandii DJ, complete genomeIsochorismatase hydrolase5e-0754.7
NC_005877:665092:690138690138690668531Picrophilus torridus DSM 9790, complete genomeisochorismatase7e-0753.9
NC_008212:61567:803368033680917582Haloquadratum walsbyi DSM 16790, complete genomeprobable isochorismatase; probable nicotinamidase; probable N-carbamoylsarcosine amidase7e-0753.9
NC_011001:2085986:214806921480692148680612Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative isochorismatase2e-0652.4
NC_016779:2693790:271063027106302711160531Bacillus cereus F837/76 chromosome, complete genomeisochorismatase6e-0650.8
NC_008600:2792584:280927028092702809800531Bacillus thuringiensis str. Al Hakam, complete genomeisochorismatase6e-0650.8