Pre_GI Gene

Some Help

Host: NC_011961 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011961:528837 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
528837529649813transcriptional regulator IclR familyQuickGO ontologyBLASTP
529719530468750protein of unknown function DUF59QuickGO ontologyBLASTP
5304655314991035amidohydrolase 2QuickGO ontologyBLASTP
5315805326231044alcohol dehydrogenase ADHQuickGO ontologyBLASTP
532881533003123hypothetical protein
533159533326168hypothetical proteinBLASTP
538092538706615isochorismatase hydrolaseQuickGO ontologyBLASTP
538904539809906hydroxymethylglutaryl-CoA lyase HMG-CoA lyase HL 3-hydroxy-3-methylglutarate-CoA lyaseQuickGO ontologyBLASTP
539851540255405ppox class probable f420-dependent enzyme familyQuickGO ontologyBLASTP
540317541240924UspA domain proteinQuickGO ontologyBLASTP
5413685424921125formamidase Formamide amidohydrolaseQuickGO ontologyBLASTP
542586543017432peroxiredoxin OsmC Osmotically-inducible protein CQuickGO ontologyBLASTP
543092543844753F420-0gamma-glutamyl ligaseQuickGO ontologyBLASTP
543848544261414pyridoxamine 5-phosphate oxidase-related FMN-bindingQuickGO ontologyBLASTP
544410545288879alphabeta hydrolase fold proteinQuickGO ontologyBLASTP
545266545394129hypothetical protein
545422545736315thioredoxin peroxidaseQuickGO ontologyBLASTP
545804545998195putative glycosyl transferaseQuickGO ontology
546023546850828xylose isomerase domain protein TIM barrelQuickGO ontologyBLASTP
546913547284372hypothetical protein
547600547743144hypothetical protein
547715547969255protein-L-isoaspartate o-methyltransferase 1QuickGO ontology
547966548235270protein of unknown function DUF92 transmembraneQuickGO ontology