Pre_GI: BLASTP Hits

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Query: NC_016822:1304398:1328098 Shigella sonnei 53G, complete genome

Start: 1328098, End: 1328721, Length: 624

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007613:1038000:104351710435171044140624Shigella boydii Sb227, complete genomeputative tail component of prophage7e-107386
NC_007384:1320287:134525713452571345880624Shigella sonnei Ss046, complete genomehypothetical bacteriophage protein9e-102369
NC_017328:2090679:210395321039532104330378Shigella flexneri 2002017 chromosome, complete genomeputative FOG: Transposase4e-54210
NC_004741:2009769:202502820250282025405378Shigella flexneri 2a str. 2457T, complete genomehypothetical bacteriophage protein4e-54210
NC_004337:2035945:204969420496942050071378Shigella flexneri 2a str. 301, complete genomehypothetical bacteriophage protein4e-54210
NC_008258:2045000:205701920570192057396378Shigella flexneri 5 str. 8401, complete genomehypothetical bacteriophage protein4e-48191
NC_011745:1055354:107370310737031074281579Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-2099
NC_011745:2025725:202831720283172028892576Escherichia coli ED1a chromosome, complete genomehypothetical protein5e-2097.4
NC_013353:1472506:149081514908151491123309Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-1374.3
NC_013008:1761165:178093017809301781238309Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein5e-1374.3
AP010958:1472506:149081514908151491123309Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein5e-1374.3
NC_011353:1761977:178209217820921782262171Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-1065.9
NC_011147:1057259:106444610644461065432987Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-1065.5
NC_011080:1166951:117451911745191175157639Salmonella enterica subsp. enterica serovar Newport str. SL254,phage tail assembly protein5e-0961.2