Pre_GI: BLASTP Hits

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Query: NC_016822:1304398:1320953 Shigella sonnei 53G, complete genome

Start: 1320953, End: 1321807, Length: 855

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1320287:133733513373351338189855Shigella sonnei Ss046, complete genomeantitermination protein Q7e-158556
NC_011748:1773642:178662017866201787441822Escherichia coli 55989, complete genomeputative antitermination protein Q of prophage6e-151533
CU928145:1773642:178662017866201787441822Escherichia coli 55989 chromosome, complete genomeputative antitermination protein Q of prophage6e-151533
NC_013364:1596278:161408016140801614901822Escherichia coli O111:H- str. 11128, complete genomeputative late gene regulator1e-136485
NC_016612:3314846:333289133328913333712822Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative late gene regulator4e-96351
NC_015663:4522109:452994845299484530769822Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative late gene regulator5e-92337
NC_016514:2476359:249825924982592499092834Enterobacter cloacae EcWSU1 chromosome, complete genomeantitermination protein Q-like protein from lambdoid prophage Qin1e-80299
NC_013282:1200993:122325312232531224017765Cronobacter turicensis, complete genomeAntitermination protein Q homolog from lambdoid prophage Qin2e-79295
NC_016860:364981:385839385839386612774Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-59229
NC_014121:3627588:366048736604873661251765Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completegp732e-55215
NC_010067:2529750:258129825812982582062765Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-54211
NC_011283:2836000:290023329002332901030798Klebsiella pneumoniae 342 chromosome, complete genomeantitermination protein3e-53208
NC_009648:1541699:156249615624961563251756Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative antitermination protein3e-49195
NC_011740:4520373:452469345246934525445753Escherichia fergusonii ATCC 35469, complete genomeputative antitermination protein Q; Qin prophage2e-45183
NC_011742:4962008:496722649672264967978753Escherichia coli S88 chromosome, complete genomeantitermination protein Q; Qin prophage2e-45183
NC_004431:3040953:305327730532773054059783Escherichia coli CFT073, complete genomeAntitermination protein Q homolog from lambdoid prophage Qin2e-45182
NC_008563:5011997:501717450171745017968795Escherichia coli APEC O1, complete genomelambdoid prophage Qin antitermination protein Q-like protein2e-45182
NC_012731:2083650:210751121075112108341831Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative prophage antitermination protein1e-44179
NC_011751:1859606:187240518724051873157753Escherichia coli UMN026 chromosome, complete genomeputative antitermination protein Q; Qin prophage2e-44179
NC_009801:1756610:176328217632821764034753Escherichia coli E24377A, complete genomeantitermination protein2e-44179
NC_013941:5317424:532221353222135322965753Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeantitermination protein Q3e-44178
NC_011750:5045927:506752550675255068277753Escherichia coli IAI39 chromosome, complete genomeputative antitermination protein Q; Qin prophage5e-44177
NC_009778:959982:984140984140984898759Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-43176
CP002516:2305659:232262023226202323372753Escherichia coli KO11, complete genomeantitermination protein3e-43175
AC_000091:1627049:164420316442031644955753Escherichia coli W3110 DNA, complete genomepredicted antitermination protein Q3e-43175
NC_010473:1712984:173013817301381730890753Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; predicted antitermination protein Q3e-43175
CU928160:1668842:168051216805121681264753Escherichia coli IAI1 chromosome, complete genomeputative antitermination protein Q; Qin prophage3e-43175
NC_000913:1625500:164051316405131641265753Escherichia coli K12, complete genomeQin prophage; predicted antitermination protein Q3e-43175
CP002185:1770815:178248417824841783236753Escherichia coli W, complete genomeQin prophage; antitermination protein Q3e-43175
NC_011741:1668842:168051216805121681264753Escherichia coli IAI1 chromosome, complete genomeputative antitermination protein Q; Qin prophage3e-43175
NC_012759:1517500:153257215325721533324753Escherichia coli BW2952 chromosome, complete genomeQin prophage; putative antitermination protein Q3e-43175
NC_016902:2305659:232262023226202323372753Escherichia coli KO11FL chromosome, complete genomeantitermination protein3e-43175
NC_010468:2265423:227956322795632280315753Escherichia coli ATCC 8739, complete genomeantitermination protein2e-43175
NC_013282:1804909:182240218224021823232831Cronobacter turicensis, complete genomehypothetical protein4e-42171
NC_016816:1970189:199006519900651990871807Pantoea ananatis LMG 5342, complete genomeprophage antitermination protein6e-41167
NC_013850:2182337:220660922066092207424816Klebsiella variicola At-22 chromosome, complete genomeantitermination protein1e-40166
NC_013892:671000:692742692742693521780Xenorhabdus bovienii SS-2004 chromosome, complete genomeFels-1 prophage chaperone2e-36152
NC_013892:3803278:382801638280163828795780Xenorhabdus bovienii SS-2004 chromosome, complete genomeFels-1 prophage chaperone2e-33142
NC_016845:2274500:229247622924762293258783Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative antitermination protein7e-32137
NC_011094:638552:661576661576662379804Salmonella enterica subsp. enterica serovar Schwarzengrund strgp233e-31135
NC_013361:2138716:215156321515632152213651Escherichia coli O26:H11 str. 11368 chromosome, complete genomelate gene regulator Q4e-31135
NC_020181:5217000:523190452319045232584681Enterobacter aerogenes EA1509E, complete genomePhage antitermination protein Q7e-31134
NC_011750:1565000:156781215678121568465654Escherichia coli IAI39 chromosome, complete genomehypothetical protein3e-27122
NC_012759:4132527:414948741494874150110624Escherichia coli BW2952 chromosome, complete genomeAntitermination protein Q1e-26120
NC_012947:3015985:301790330179033018526624Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeantitermination protein6e-26117
NC_011147:2496808:250523525052352505858624Salmonella enterica subsp. enterica serovar Paratyphi A strantitermination4e-24112
NC_006511:2501500:250969925096992510322624Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCantitermination4e-24112
NC_011740:2072173:210218721021872102810624Escherichia fergusonii ATCC 35469, complete genomeAntitermination protein Q4e-24112
NC_009800:289000:307726307726308349624Escherichia coli HS, complete genomeantitermination protein Q4e-24112
NC_011601:1039500:105835610583561058979624Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomelate gene regulator2e-2099.8
NC_013361:3112023:312051731205173121140624Escherichia coli O26:H11 str. 11368 chromosome, complete genomelate gene regulator2e-2099.8
NC_013364:2898964:291048229104822911105624Escherichia coli O111:H- str. 11128, complete genomeputative late gene regulator2e-2099.8
NC_013008:3525428:354674735467473547370624Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeantiterminator of prophage CP-933Y6e-2098.2
NC_011353:3573641:359190835919083592531624Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeantitermination protein Q6e-2098.2
NC_002695:3468873:348776234877623488385624Escherichia coli O157:H7 str. Sakai, complete genomeputative antitermination protein6e-2098.2
NC_002655:3538656:355508535550853555708624Escherichia coli O157:H7 EDL933, complete genomeputative antiterminator of prophage CP-933Y6e-2098.2
NC_013361:3287671:328767132876713288246576Escherichia coli O26:H11 str. 11368 chromosome, complete genomelate gene regulator Q9e-1890.9
NC_011750:1565000:157036315703631570647285Escherichia coli IAI39 chromosome, complete genome9e-0754.3