Pre_GI: BLASTP Hits

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Query: NC_015848:1708176:1720902 Mycobacterium canettii CIPT 140010059, complete genome

Start: 1720902, End: 1721597, Length: 696

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017026:1686500:169774916977491698444696Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein1e-126452
NC_016768:2704350:271271727127172713412696Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein1e-126452
NC_012943:2707677:271604427160442716739696Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein1e-126452
NC_009525:1685522:169824416982441698939696Mycobacterium tuberculosis H37Ra, complete genomehypothetical protein1e-126452
NC_000962:1684005:169672716967271697422696Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein1e-126452
NC_002755:1684161:169688316968831697578696Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein1e-126452
NC_009565:1688642:170136417013641702059696Mycobacterium tuberculosis F11, complete genomehypothetical protein1e-126452
NC_019950:1689910:170148717014871702182696Mycobacterium canettii CIPT 140060008 complete genomehypothetical protein4e-126450
NC_010612:2777687:279438127943812795019639Mycobacterium marinum M, complete genomehypothetical protein8e-101366
NC_016604:297687:319654319654320478825Mycobacterium rhodesiae NBB3 chromosome, complete genomeWbqC-like protein3e-99360
NC_008380:855246:871887871887872579693Rhizobium leguminosarum bv. viciae 3841, complete genomehypothetical protein4e-86317
NC_009719:3532587:354513735451373545835699Parvibaculum lavamentivorans DS-1 chromosome, complete genomeWbqC-like family protein8e-83306
NC_008702:2942246:295588229558822956574693Azoarcus sp. BH72, complete genomeconserved hypothetical protein7e-67253
NC_007796:3379614:339371933937193394414696Methanospirillum hungatei JF-1, complete genomehypothetical protein3e-47187
NC_008510:1339926:136124013612401361923684Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,hypothetical protein2e-41169
NC_008508:1382036:140335914033591404042684Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,hypothetical protein2e-41169
NC_016112:3103716:313679131367913137528738Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein2e-37155
NC_018645:4104302:412778641277864128493708Desulfobacula toluolica Tol2, complete genomehypothetical protein7e-29127
NC_007954:1494291:151403615140361514761726Shewanella denitrificans OS217, complete genomehypothetical protein2e-27122
NC_017068:2436960:248642424864242487182759Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein1e-26120
NC_012491:5628000:564535056453505646036687Brevibacillus brevis NBRC 100599, complete genomehypothetical protein1e-25116
NC_013204:799857:816866816866817588723Eggerthella lenta DSM 2243, complete genomeWbqC-like family protein2e-21102
NC_002928:123126:136026136026136745720Bordetella parapertussis 12822, complete genomehypothetical protein7e-21100
NC_020418:603750:620210620210620920711Morganella morganii subsp. morganii KT, complete genomehypothetical protein1e-20100
NC_018643:1037456:104583010458301046516687Alpha proteobacterium HIMB5 chromosome, complete genomeWbqC-like protein3e-1892
NC_008228:3679949:369075736907573691467711Pseudoalteromonas atlantica T6c, complete genomehypothetical protein6e-1890.9
NC_012881:4023895:403166240316624032366705Desulfovibrio salexigens DSM 2638, complete genomeWbqC-like family protein1e-1790.1
NC_004347:3303957:332274833227483323470723Shewanella oneidensis MR-1, complete genomehypothetical protein9e-1787
NC_007651:3656433:365993436599343660644711Burkholderia thailandensis E264 chromosome I, complete sequenceWbnG2e-1686.3
NC_008060:3155133:315513331551333155885753Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencehypothetical protein1e-1377
NC_006138:23902:423134231343002690Desulfotalea psychrophila LSv54, complete genomehypothetical protein1e-1376.6
NC_014121:1357339:138242913824291383127699Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeWbqC-like family protein1e-1273.6
NC_007512:865500:880460880460881158699Pelodictyon luteolum DSM 273, complete genomehypothetical protein1e-1273.6
NC_015968:2845751:284802028480202848724705Enterobacter asburiae LF7a chromosome, complete genomeWbqC-like family protein4e-1271.6
NC_012917:2921932:293384429338442934545702Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeWbqC-like family protein3e-0962
NC_004547:1970686:198177319817731982474702Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein1e-0860.5
NC_009831:3612206:362618836261883626886699Shewanella sediminis HAW-EB3, complete genomehypothetical protein3e-0858.9
NC_014933:785457:790084790084790752669Bacteroides helcogenes P 36-108 chromosome, complete genomeWbqC-like family protein4e-0755.1