Pre_GI: BLASTP Hits

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Query: NC_015733:2658337:2663728 Pseudomonas putida S16 chromosome, complete genome

Start: 2663728, End: 2663967, Length: 240

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:3282500:330249833024983302713216Pseudomonas putida F1, complete genomephage transcriptional regulator, AlpA3e-29127
NC_012660:2143376:215198521519852152215231Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage-like protein8e-22102
NC_008344:49039:121606121606121818213Nitrosomonas eutropha C91, complete genomephage transcriptional regulator, AlpA3e-1994
NC_016830:3869572:394020739402073940377171Pseudomonas fluorescens F113 chromosome, complete genometranscriptional regulator in PFGI-1-like cluster6e-1992.8
NC_015379:2417312:246348524634852463706222Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, AlpA family3e-1890.5
NC_010170:1324758:135213513521351352347213Bordetella petrii, complete genomeputative transcriptional regulator (phage-related)3e-1890.5
NC_007086:2477040:248606124860612486282222Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein1e-1788.6
NC_010688:2781624:279949727994972799718222Xanthomonas campestris pv. campestris, complete genomephage-related regulatory protein1e-1788.6
NC_008782:1510000:151461215146121514824213Acidovorax sp. JS42, complete genomephage transcriptional regulator, AlpA2e-1787.8
NC_009138:1974935:198388419838841984096213Herminiimonas arsenicoxydans, complete genomeputative CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage2e-1787.4
NC_012691:2614603:262271626227162622955240Tolumonas auensis DSM 9187, complete genomephage transcriptional regulator, AlpA5e-1786.7
NC_014972:247028:265810265810266025216Desulfobulbus propionicus DSM 2032 chromosome, complete genomephage transcriptional regulator, AlpA3e-1063.9
NC_003143:2137945:213871521387152138996282Yersinia pestis CO92, complete genomeputative transcriptional regulator4e-0960.1
NC_008150:1420825:142179414217941422075282Yersinia pestis Antiqua, complete genomehypothetical protein4e-0960.1
NC_005810:1794490:179545917954591795740282Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulator4e-0960.1
NC_012731:3411161:342822134282213428406186Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative transcriptional regulator6e-0959.7
NC_009381:1362471:139729913972991397484186Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulator6e-0959.7
NC_010634:1916000:191718019171801917365186Yersinia pseudotuberculosis PB1/+, complete genomephage transcriptional regulator, AlpA6e-0959.7
NC_010622:249625:279209279209279430222Burkholderia phymatum STM815 chromosome 1, complete sequencephage transcriptional regulator, AlpA1e-0858.9
NC_011283:1811000:185314418531441853353210Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AlpA family2e-0858.2
NC_003911:2042389:205289020528902053081192Silicibacter pomeroyi DSS-3, complete genomeDNA-binding protein, putative2e-0857.8
NC_010676:2793237:279827727982772798510234Burkholderia phytofirmans PsJN chromosome 2, complete sequencephage transcriptional regulator, AlpA2e-0857.4
NC_018691:3525430:356425235642523564566315Alcanivorax dieselolei B5 chromosome, complete genomePhage transcriptional regulator, AlpA3e-0857.4
NC_016818:1795576:183513518351351835329195Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative transcriptional regulator4e-0857
NC_021150:1677811:168637216863721686659288Azotobacter vinelandii CA6, complete genomeProphage CP4-57 regulatory, AlpA-like protein7e-0856.2
NC_012560:1677798:168635916863591686646288Azotobacter vinelandii DJ, complete genomeProphage CP4-57 regulatory, AlpA-like protein7e-0856.2
NC_020908:1472981:149682614968261497020195Octadecabacter arcticus 238, complete genomeprophage regulatory protein-like protein9e-0855.8
NC_017047:2079368:208454920845492084743195Rahnella aquatilis HX2 chromosome, complete genomeputative prophage regulatory protein8e-0855.8
NC_014500:3097362:314293231429323143126195Dickeya dadantii 3937 chromosome, complete genomeDNA-binding protein1e-0755.5
NC_012912:1701231:171525317152531715447195Dickeya zeae Ech1591, complete genomephage transcriptional regulator, AlpA1e-0755.5
NC_013421:1819036:184166718416671841861195Pectobacterium wasabiae WPP163, complete genomephage transcriptional regulator, AlpA1e-0755.1
NC_004547:1873390:188101818810181881212195Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative prophage regulatory protein1e-0755.1
NC_017047:1906000:190691119069111907213303Rahnella aquatilis HX2 chromosome, complete genomeDNA binding protein2e-0754.7
NC_013592:2968500:299374929937492993943195Dickeya dadantii Ech586, complete genomephage transcriptional regulator, AlpA3e-0753.9
NC_015422:2806832:282494928249492825182234Alicycliphilus denitrificans K601 chromosome, complete genomephage transcriptional regulator AlpA3e-0753.9
NC_020304:752012:772470772470772679210Desulfocapsa sulfexigens DSM 10523, complete genomeputative transcriptional regulator3e-0753.9
NC_007404:2743877:275254427525442752756213Thiobacillus denitrificans ATCC 25259, complete genomePossible Transcriptional Regulator1e-0652
NC_007722:2993852:299950229995022999717216Erythrobacter litoralis HTCC2594, complete genomehypothetical protein1e-0652
NC_014117:132524:174940174940175527588Burkholderia sp. CCGE1002 chromosome chromosome 1, completephage transcriptional regulator, AlpA2e-0651.6
NC_011745:2209288:226533522653352265553219Escherichia coli ED1a chromosome, complete genomeputative DNA binding protein from phage origin1e-0651.6
AP010958:1305712:132750913275091327829321Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative DNA binding protein1e-0651.6
NC_013353:1305712:132750913275091327829321Escherichia coli O103:H2 str. 12009, complete genomeDNA binding protein1e-0651.6
NC_005139:2201820:227257322725732272794222Vibrio vulnificus YJ016 chromosome I, complete sequencepredicted transcriptional regulator2e-0650.8
NC_013008:1513000:153756115375611537749189Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA binding protein3e-0650.8
NC_002695:1571389:159634515963451596533189Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA binding protein3e-0650.8
NC_016832:948029:957798957798958013216Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-0650.4
NC_013892:3278647:328257832825783282784207Xenorhabdus bovienii SS-2004 chromosome, complete genomeCP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage4e-0650.4
NC_014500:3744705:376114837611483761351204Dickeya dadantii 3937 chromosome, complete genomeputative regulatory protein3e-0650.4
NC_013892:1272448:129876412987641298970207Xenorhabdus bovienii SS-2004 chromosome, complete genomeCP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage5e-0650.1
NC_004578:3849835:386503638650363865278243Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA-binding protein, putative5e-0650.1
NC_020211:996497:100966210096621009928267Serratia marcescens WW4, complete genomehypothetical protein5e-0650.1
NC_013456:212150:224574224574224762189Vibrio sp. Ex25 chromosome 1, complete genomepredicted transcriptional regulator6e-0649.7
NC_011745:3245000:326245132624513262654204Escherichia coli ED1a chromosome, complete genomeputative regulatory protein from prophage (AlpA family)8e-0649.3