Pre_GI: BLASTP Hits

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Query: NC_013890:1175931:1184632 Dehalococcoides sp. GT chromosome, complete genome

Start: 1184632, End: 1187310, Length: 2679

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: Temp: Mesophile; Habitat: Fresh water, Groundwater. Dehalococcoides sp. GT was isolated from an chloroethene-contaminated aquifer. This strain can dechlorinate trichloroethene and vinyl chloride. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007356:1165760:1208782120878212114752694Dehalococcoides sp. CBDB1, complete genomeputative CRISPR-associated helicase Cas301854
NC_013524:1150725:1150725115072511535352811Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeCRISPR-associated helicase Cas38e-154545
NC_007775:723925:7396277396277423082682Synechococcus sp. JA-3-3Ab, complete genomeCRISPR-associated helicase Cas37e-132472
NC_008609:2518993:2531914253191425345532640Pelobacter propionicus DSM 2379, complete genomeCRISPR-associated helicase Cas38e-121435
NC_015387:942974:9498269498269526002775Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeCRISPR-associated helicase Cas31e-101371
NC_012560:1677798:1699773169977317024782706Azotobacter vinelandii DJ, complete genomeCRISPR-associated helicase Cas3, core4e-99363
NC_021150:1677811:1699786169978617024912706Azotobacter vinelandii CA6, complete genomeCRISPR-associated helicase Cas3, core4e-99363
NC_013510:3117837:3128254312825431311512898Thermomonospora curvata DSM 43183, complete genomeCRISPR-associated helicase Cas35e-95349
NC_007333:1743890:1844722184472218476342913Thermobifida fusca YX, complete genomeCRISPR-associated helicase Cas3, core5e-91336
NC_016109:603829:6205116205116233722862Kitasatospora setae KM-6054, complete genomeputative CRISPR-associated helicase7e-90332
NC_006361:4574536:4590706459070645934502745Nocardia farcinica IFM 10152, complete genomehypothetical protein1e-88328
NC_013131:4422000:4432703443270344373254623Catenulispora acidiphila DSM 44928, complete genomeCRISPR-associated protein, Cse1 family2e-88328
NC_015170:54000:5707057070599612892Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequenceCRISPR-associated helicase Cas33e-86320
NC_018720:1812000:1820832182083218239993168Bifidobacterium asteroides PRL2011 chromosome, complete genomeCRISPR-associated helicase Cas32e-85317
NC_008529:735233:7468327468327495972766Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeCRISPR-associated helicase1e-84314
NC_008054:745704:7546887546887574532766Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeCRISPR-associated helicase Cas33e-84313
NC_014727:798191:8099868099868127512766Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,crispr-associated helicase cas34e-84313
NC_019673:1988853:2042190204219020449372748Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated helicase Cas34e-83310
NC_014318:6395392:6449887644988764521662280Amycolatopsis mediterranei U32 chromosome, complete genomeCRISPR-associated helicase Cas32e-82308
NC_017186:6395435:6449931644993164522102280Amycolatopsis mediterranei S699 chromosome, complete genomeCRISPR-associated helicase Cas32e-82308
NC_008278:514600:5190645190645218652802Frankia alni ACN14a, complete genomehypothetical protein; putative DEAD/DEAH box helicase domain9e-83308
NC_010610:795975:8050038050038077262724Lactobacillus fermentum IFO 3956, complete genomehypothetical protein5e-82306
NC_012590:977920:9836789836789864882811Corynebacterium aurimucosum ATCC 700975, complete genomeCRISPR-associated protein2e-80300
NC_007333:1743890:1835906183590618387402835Thermobifida fusca YX, complete genomecRISPR-associated helicase Cas3, core6e-80299
NC_007164:775000:7834007834007862522853Corynebacterium jeikeium K411, complete genomehypothetical protein1e-78295
NC_002932:1851070:1868933186893318715182586Chlorobium tepidum TLS, complete genomehypothetical protein7e-77289
NC_015737:2146953:2151963215196321547312769Clostridium sp. SY8519, complete genomeputative helicase2e-76288
NC_015436:1287873:1293817129381712964352619Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated helicase Cas32e-76288
NC_015389:481282:4862164862164893563141Coriobacterium glomerans PW2 chromosome, complete genomeCRISPR-associated helicase Cas35e-75283
NC_012912:1053618:1059035105903510616502616Dickeya zeae Ech1591, complete genomeCRISPR-associated helicase Cas36e-75283
NC_013851:759500:7688657688657714982634Allochromatium vinosum DSM 180 chromosome, complete genomeCRISPR-associated helicase Cas36e-75282
NC_008526:343445:3475193475193502872769Lactobacillus casei ATCC 334, complete genomeCRISPR-associated helicase4e-74280
NC_013159:1422370:1428340142834014308382499Saccharomonospora viridis DSM 43017, complete genomeCRISPR-associated helicase Cas36e-72273
NC_013850:985331:9897249897249924172694Klebsiella variicola At-22 chromosome, complete genomeCRISPR-associated helicase Cas34e-71270
NC_015951:107360:1140161140161167872772Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, completeCRISPR-associated helicase Cas39e-70265
NC_015676:1663700:1675169167516916779222754Methanosalsum zhilinae DSM 4017 chromosome, complete genomeCRISPR-associated helicase Cas35e-68259
NC_009800:2889928:2901786290178629044522667Escherichia coli HS, complete genomeCRISPR-associated helicase Cas39e-65249
NC_010468:1029471:1036180103618010388462667Escherichia coli ATCC 8739, complete genomeCRISPR-associated helicase Cas32e-64248
NC_010473:2963951:2975117297511729777832667Escherichia coli str. K-12 substr. DH10B, complete genomeconserved protein, member of DEAD box family2e-63244
NC_000913:2873443:2882575288257528852412667Escherichia coli K12, complete genomeconserved protein, member of DEAD box family2e-63244
AC_000091:2872000:2883209288320928858752667Escherichia coli W3110 DNA, complete genomeconserved hypothetical protein, member of DEAD box family2e-63244
NC_012759:2757826:2768387276838727710532667Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-63244
NC_002939:1505701:1512324151232415149752652Geobacter sulfurreducens PCA, complete genomeCRISPR-associated helicase Cas31e-61238
NC_014355:1461355:1466467146646714691962730Candidatus Nitrospira defluvii, complete genomeCRISPR-associated helicase Cas37e-59229
NC_007643:185135:2063192063192090812763Rhodospirillum rubrum ATCC 11170, complete genomeCRISPR-associated helicase Cas3, core2e-48195
NC_002935:2292835:2302097230209723047272631Corynebacterium diphtheriae NCTC 13129, complete genomePutative helicase4e-46187
NC_008340:1075500:1085465108546510880802616Alkalilimnicola ehrlichei MLHE-1, complete genomeCRISPR-associated helicase Cas33e-45184
NC_016786:2235731:2246368224636822489982631Corynebacterium diphtheriae HC01 chromosome, complete genomeCRISPR-associated protein1e-44182
NC_016782:2235000:2245769224576922483992631Corynebacterium diphtheriae 241 chromosome, complete genomeCRISPR-associated protein1e-44182
NC_015966:521703:5467875467875490452259Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeCRISPR-associated helicase Cas33e-44181
NC_009973:77518:9643396433988472415Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeCRISPR-associated helicase Cas32e-26121
NC_015966:1316901:1323321132332113254982178Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomemetal dependent phosphohydrolase6e-25117
NC_015571:290355:3024493024493047522304Porphyromonas gingivalis TDC60, complete genomeCRISPR-associated helicase Cas38e-24113
NC_016610:2489415:2495937249593724980212085Tannerella forsythia ATCC 43037 chromosome, complete genomeCRISPR-associated helicase Cas32e-23112
NC_010803:483713:4952324952324974842253Chlorobium limicola DSM 245, complete genomeCRISPR-associated helicase Cas33e-23110
NC_002950:2098454:2106124210612421084602337Porphyromonas gingivalis W83, complete genomeCRISPR-associated helicase Cas34e-22107
NC_009486:1103915:1112028111202811143192292Thermotoga petrophila RKU-1 chromosome, complete genomeCRISPR-associated helicase Cas32e-21105
NC_000961:135493:1538931538931559652073Pyrococcus horikoshii OT3, complete genomehypothetical protein7e-21103
NC_010424:1356000:1362881136288113652682388Candidatus Desulforudis audaxviator MP104C, complete genomeCRISPR-associated helicase Cas39e-21102
NC_012440:1249941:1259969125996912622182250Persephonella marina EX-H1, complete genomecrispr-associated helicase Cas37e-20100
NC_015680:1275252:1275252127525212773302079Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas3 domain-containing protein7e-20100
NC_000916:983500:1001172100117210036642493Methanothermobacter thermautotrophicus str. Delta H, completehypothetical protein6e-1997.1
NC_013216:921377:9279929279929302262235Desulfotomaculum acetoxidans DSM 771, complete genomeCRISPR-associated helicase Cas39e-1996.3
NC_014150:1423758:1423758142375814260522295Brachyspira murdochii DSM 12563 chromosome, complete genomeCRISPR-associated helicase Cas32e-1895.1
NC_016051:460624:4687704687704713762607Thermococcus sp. AM4 chromosome, complete genomeCRISPR-associated helicase Cas34e-1894.4
NC_014206:1467000:1474954147495414771312178Geobacillus sp. C56-T3 chromosome, complete genomeCRISPR-associated helicase Cas32e-1791.7
NC_013849:1595924:1614550161455016161781629Ferroglobus placidus DSM 10642 chromosome, complete genomeCRISPR-associated helicase Cas32e-1688.2
NC_017096:260333:2653822653822676282247Caldisericum exile AZM16c01, complete genomeputative CRISPR-associated protein4e-1687.4
NC_000918:246792:2467922467922489812190Aquifex aeolicus VF5, complete genomehypothetical protein6e-1687
NC_015865:685882:6936206936206959262307Thermococcus sp. 4557 chromosome, complete genomeCRISPR-associated helicase Cas3-like protein7e-1686.7
NC_011296:1039749:1058944105894410605751632Thermodesulfovibrio yellowstonii DSM 11347, complete genomeCRISPR-associated helicase Cas31e-1585.9
NC_015680:841783:8449328449328471092178Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas31e-1585.9
NC_020134:1783000:1791244179124417935892346Clostridium stercorarium subsp. stercorarium DSM 8532, completeCRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD1e-1585.9
NC_019978:922978:9399719399719423132343Halobacteroides halobius DSM 5150, complete genomeCRISPR-associated helicase Cas34e-1584
NC_015557:583475:5965515965515988422292Hydrogenobaculum sp. 3684 chromosome, complete genomeCRISPR-associated helicase Cas32e-1482
NC_015587:583530:5966065966065988972292Hydrogenobaculum sp. SHO chromosome, complete genomeCRISPR-associated helicase Cas32e-1482
NC_020411:583503:5965795965795988702292Hydrogenobaculum sp. HO, complete genomeCRISPR-associated helicase Cas32e-1482
NC_015573:2975000:2983739298373929862492511Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeCRISPR-associated helicase Cas35e-1480.9
NC_008095:8837612:8867872886787288701122241Myxococcus xanthus DK 1622, complete genomeCRISPR-associated helicase Cas35e-1480.5
NC_015975:1056731:1070620107062010729322313Lactobacillus ruminis ATCC 27782 chromosome, complete genomeCRISPR-associated helicase Cas31e-1379.3
NC_013501:1881692:1900060190006019024352376Rhodothermus marinus DSM 4252, complete genomeCRISPR-associated helicase Cas32e-1378.6
NC_000917:40111:6883068830711092280Archaeoglobus fulgidus DSM 4304, complete genomeATP-dependent RNA helicase, putative4e-1377.8
NC_019942:1370872:1377646137764613798472202Aciduliprofundum sp. MAR08-339, complete genomeDEAD/DEAH box helicase4e-1377.4
NC_005823:1105524:1130506113050611327582253Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130ATP-dependent RNA helicase4e-1273.9
NC_008148:258292:2745562745562770212466Rubrobacter xylanophilus DSM 9941, complete genomeCRISPR-associated helicase Cas3, core6e-1273.6
NC_004342:3164500:3167477316747731697352259Leptospira interrogans serovar Lai str. 56601 chromosome I,ATP-dependent RNA helicase6e-1273.6
NC_009953:2302337:230626623062662306832567Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein8e-1273.2
NC_014471:849032:8613638613638633872025Ignisphaera aggregans DSM 17230 chromosome, complete genomeCRISPR-associated helicase Cas31e-1172.8
NC_013894:1:1428214282159881707Thermocrinis albus DSM 14484 chromosome, complete genomeCRISPR-associated helicase Cas33e-1171.2
NC_011978:699500:7103537103537115461194Thermotoga neapolitana DSM 4359, complete genomeCRISPR-associated helicase, Cas3 family4e-1067.8
NC_014961:969500:9790069790069807781773Desulfurococcus mucosus DSM 2162 chromosome, complete genomeCRISPR-associated helicase Cas37e-1066.6
NC_011899:1603500:1626098162609816285662469Halothermothrix orenii H 168, complete genomeCRISPR-associated helicase Cas31e-0965.9
NC_015416:2838020:2843201284320128456032403Methanosaeta concilii GP-6 chromosome, complete genomeCRISPR-associated helicase Cas35e-0963.9
NC_015680:841783:8522428522428538221581Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas35e-0963.9
NC_013502:102430:373728382802Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequenceCRISPR-associated helicase Cas3, Anaes-subtype4e-0861.2
NC_000917:1666836:1685466168546616871061641Archaeoglobus fulgidus DSM 4304, complete genomehypothetical protein5e-0860.8
NC_014098:2735500:2740062274006227426232562Bacillus tusciae DSM 2912 chromosome, complete genomeCRISPR-associated helicase Cas33e-0758.2
NC_014160:748743:7624207624207642341815Thermosphaera aggregans DSM 11486 chromosome, complete genomeCRISPR-associated helicase Cas33e-0757.8
NC_014831:1140356:1146456114645611495213066Thermaerobacter marianensis DSM 12885 chromosome, complete genomeCRISPR-associated helicase Cas3, Anaes-subtype5e-0757.4
NC_006513:1949751:1959781195978119622672487Azoarcus sp. EbN1, complete genomepredicted CRISPR-associated helicase1e-0656.2
NC_012632:884811:9003919003919020371647Sulfolobus islandicus M.16.27 chromosome, complete genomeCRISPR-associated helicase Cas33e-0654.7
NC_012588:800942:8150738150738167191647Sulfolobus islandicus M.14.25 chromosome, complete genomeCRISPR-associated helicase Cas33e-0654.7
NC_000854:770000:7787457787457804571713Aeropyrum pernix K1, complete genomeCRISPR-associated helicase Cas33e-0654.7