Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:2889928 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
28899282890239312cell division protein FtsBQuickGO ontologyBLASTP
28904332890756324hypothetical proteinBLASTP
28908062891411606adenylylsulfate kinaseQuickGO ontologyBLASTP
289141128928381428sulfate adenylyltransferase subunit 1QuickGO ontologyBLASTP
28928402893748909sulfate adenylyltransferase subunit 2QuickGO ontologyBLASTP
289400028950371038alkaline phosphatase isozyme conversion peptidaseQuickGO ontologyBLASTP
28950862895232147hypothetical protein
28952762895536261hypothetical protein
28960882897005918CRISPR-associated protein Cas1QuickGO ontologyBLASTP
28970212897620600CRISPR-associated protein Cse3 familyQuickGO ontologyBLASTP
28976072898287681CRISPR-associated protein Cas5 Ecoli subtypeQuickGO ontologyBLASTP
289828428993751092CRISPR-associated protein Cse4 familyQuickGO ontologyBLASTP
28993882899870483CRISPR-associated protein Cse2 familyQuickGO ontologyBLASTP
289986329013711509CRISPR-associated protein Cse1 familyQuickGO ontologyBLASTP
29013682901487120hypothetical protein
290178629044522667CRISPR-associated helicase Cas3QuickGO ontologyBLASTP
29048112905545735phosphoadenosine phosphosulfate reductaseQuickGO ontologyBLASTP
290561929073311713sulfite reductase NADPH hemoprotein beta-componentQuickGO ontologyBLASTP
290733129091301800sulfite reductase NADPH flavoprotein alpha-componentQuickGO ontologyBLASTP
29094462909811366queuosine biosynthesis protein QueDQuickGO ontologyBLASTP
290988929111601272pyridine nucleotide-disulphide oxidoreductase family proteinQuickGO ontologyBLASTP
29111512911411261putative ferredoxinQuickGO ontologyBLASTP
29114282912003576glycerol-3-phosphate responsive antiterminatorQuickGO ontologyBLASTP