Pre_GI Gene

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Host: NC_008148 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008148:258292 Rubrobacter xylanophilus DSM 9941, complete genome

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2582922593441053peptidase M42QuickGO ontologyBLASTP
259502259987486phosphoribosylaminoimidazole carboxylase catalytic subunitQuickGO ontologyBLASTP
2599842611501167phosphoribosylaminoimidazole carboxylase ATPase subunitQuickGO ontologyBLASTP
2611952622051011Alcohol dehydrogenase zinc-binding proteinQuickGO ontologyBLASTP
263398263667270protein of unknown function DUF196QuickGO ontologyBLASTP
263671264666996CRISPR-associated protein Cas1QuickGO ontologyBLASTP
2646732657941122CRISPR-associated protein APE2256QuickGO ontologyBLASTP
2657872670041218CRISPR-associated protein TM1791QuickGO ontologyBLASTP
267001267426426CRISPR-associated protein TM17911QuickGO ontologyBLASTP
267426268226801CRISPR-associated RAMP Cmr4QuickGO ontologyBLASTP
2682352693171083hypothetical proteinBLASTP
2693142712031890CRISPR-associated protein Crm2QuickGO ontologyBLASTP
2712002723421143CRISPR-associated protein TM1795 family-like proteinQuickGO ontologyBLASTP
2723452740571713CRISPR-associated protein TM1812QuickGO ontologyBLASTP
274071274559489CRISPR-associated protein Cas4QuickGO ontologyBLASTP
2745562770212466CRISPR-associated helicase Cas3 coreQuickGO ontologyBLASTP
277018277794777CRISPR-associated protein Cas5QuickGO ontologyBLASTP