Pre_GI: BLASTP Hits

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Query: NC_012668:3037345:3039709 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 3039709, End: 3040017, Length: 309

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016445:89500:106572106572106841270Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeerror-prone repair protein UmuC2e-47187
NC_010554:2646806:2725243272524327265111269Proteus mirabilis HI4320, complete genomeDNA repair protein3e-40163
NC_015410:2351464:2380712238071223819711260Pseudomonas mendocina NK-01 chromosome, complete genomeultraviolet light resistance protein B1e-29128
NC_009434:3611738:363115336311533631404252Pseudomonas stutzeri A1501, complete genomeUV repair DNA polymerase3e-28123
NC_016776:2237404:2239666223966622409491284Bacteroides fragilis 638R, complete genomeputative RumB/ImpB like DNA repair protein2e-27121
NC_006347:2190000:2190977219097721922601284Bacteroides fragilis YCH46, complete genomeSOS mutagenesis and repair protein UmuC homolog1e-27121
NC_003228:2245181:2248666224866622499491284Bacteroides fragilis NCTC 9343, complete genomeputative RumB/ImpB like DNA repair protein1e-27121
NC_004129:2234851:2244215224421522454951281Pseudomonas fluorescens Pf-5, complete genomeultraviolet light resistance protein B, interruption-C7e-27119
NC_016830:3869572:3877640387764038789171278Pseudomonas fluorescens F113 chromosome, complete genomeprotein UmuC7e-27119
NC_008570:2216736:2248997224899722502711275Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeprotein UmuC2e-26117
NC_007275:1:2175217534581284Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completeRulB protein2e-26117
NC_015424:2726223:2763991276399127652681278Aeromonas veronii B565 chromosome, complete genomeprotein UmuC2e-26117
NC_016830:4999946:5011546501154650128231278Pseudomonas fluorescens F113 chromosome, complete genomeprotein UmuC5e-26116
NC_015222:2475792:2495405249540524967001296Nitrosomonas sp. AL212 chromosome, complete genomeDNA-directed DNA polymerase4e-26116
NC_015566:3269469:3277699327769932789671269Serratia sp. AS12 chromosome, complete genomeDNA-directed DNA polymerase3e-26116
NC_006576:2683467:7716771689721257Synechococcus elongatus PCC 6301, complete genomeDNA polymerase V1e-25115
NC_007604:1586243:1606746160674616080021257Synechococcus elongatus PCC 7942, complete genomeDNA-directed DNA polymerase1e-25115
NC_012125:4536383:4555441455544145567151275Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA polymerase V subunit UmuC1e-25115
NC_015424:3520783:3553264355326435545231260Aeromonas veronii B565 chromosome, complete genomeprotein UmuC1e-25115
NC_003198:4453457:4472479447247944737531275Salmonella enterica subsp. enterica serovar Typhi str. CT18,DNA polymerase IV9e-26115
NC_016832:4425330:4444352444435244456261275Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-26115
NC_008570:1143578:1164200116420011654591260Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeprotein UmuC9e-26115
NC_015663:4488058:4499510449951045007751266Enterobacter aerogenes KCTC 2190 chromosome, complete genomeDNA polymerase V subunit UmuC8e-26115
NC_015663:4735808:4743545474354547448101266Enterobacter aerogenes KCTC 2190 chromosome, complete genomeDNA polymerase V subunit UmuC2e-25114
NC_015970:19850:2427124271255301260Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, completeDNA-directed DNA polymerase2e-25114
NC_011761:1499500:1513748151374815150311284Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeumuC protein9e-25112
NC_016816:2925459:2936866293686629381281263Pantoea ananatis LMG 5342, complete genomeDNA polymerase V subunit UmuC9e-25112
NC_007005:1605000:1612927161292716142071281Pseudomonas syringae pv. syringae B728a, complete genomeDNA-directed DNA polymerase8e-25112
NC_004129:5373886:5421354542135454226251272Pseudomonas fluorescens Pf-5, complete genomeultraviolet light resistance protein B, interruption-C6e-25112
NC_014304:77715:883108831088546237Erwinia billingiae Eb661 plasmid pEB102, complete sequence6e-25112
NC_020064:1962172:1974884197488419761521269Serratia marcescens FGI94, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair5e-25112
NC_017047:1934430:1944000194400019452651266Rahnella aquatilis HX2 chromosome, complete genomeDNA polymerase V subunit UmuC3e-24110
NC_015731:2460248:2458963245896324602551293Nitrosomonas sp. Is79A3 chromosome, complete genomeUMUC domain-containing protein DNA-repair protein7e-24109
NC_014305:97055:1108391108391121131275Erwinia billingiae Eb661 plasmid pEB170, complete sequenceDNA polymerase V subunit1e-23108
NC_013850:1887556:1936856193685619381211266Klebsiella variicola At-22 chromosome, complete genomeDNA-directed DNA polymerase1e-23108
NC_007005:830467:840908840908841153246Pseudomonas syringae pv. syringae B728a, complete genomeumuC protein1e-23108
NC_009512:5632591:5657225565722556585051281Pseudomonas putida F1, complete genomeDNA-directed DNA polymerase8e-24108
NC_014394:2577949:2587767258776725890411275Gallionella capsiferriformans ES-2 chromosome, complete genomeDNA-directed DNA polymerase7e-24108
NC_009792:1739970:1746105174610517473701266Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-23107
NC_011283:3177350:3185304318530431865691266Klebsiella pneumoniae 342 chromosome, complete genomeDNA polymerase V subunit UmuC3e-23107
NC_009436:2056000:2070165207016520714271263Enterobacter sp. 638, complete genomeDNA-directed DNA polymerase3e-23107
NC_015167:1154497:1154497115449711557531257Cellulophaga lytica DSM 7489 chromosome, complete genomeDNA-directed DNA polymerase6e-23106
NC_008255:1701195:1719517171951717207791263Cytophaga hutchinsonii ATCC 33406, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair3e-23106
NC_014323:3976351:398287439828743983362489Herbaspirillum seropedicae SmR1 chromosome, complete genomeSOS mutagenesis and repair protein7e-23105
NC_007626:2204767:2245935224593522472121278Magnetospirillum magneticum AMB-1, complete genomeNucleotidyltransferase/DNA polymerase involved in DNA repair9e-23105
NC_015572:2186394:2186394218639421876951302Methylomonas methanica MC09 chromosome, complete genomeDNA-directed DNA polymerase1e-22105
NC_016002:1741109:1748926174892617501911266Pseudogulbenkiania sp. NH8B, complete genomeDNA-directed DNA polymerase1e-22105
NC_016002:2179969:2187277218727721885421266Pseudogulbenkiania sp. NH8B, complete genomeDNA-directed DNA polymerase1e-22105
NC_013282:1842412:1849918184991818511801263Cronobacter turicensis, complete genomeProtein umuC2e-22104
NC_021066:2197490:2204060220406022053251266Raoultella ornithinolytica B6, complete genomeDNA polymerase V subunit UmuC2e-22104
NC_016514:2476359:2487016248701624882841269Enterobacter cloacae EcWSU1 chromosome, complete genomeUmuC1e-22104
NC_020260:1293860:1300668130066813019301263Cronobacter sakazakii Sp291, complete genomeDNA polymerase V subunit UmuC12e-22103
NC_008341:29038:4657946579478741296Nitrosomonas eutropha C91 plasmid1, complete sequenceDNA-directed DNA polymerase3e-22103
NC_009436:2395913:2403234240323424045021269Enterobacter sp. 638, complete genomeDNA polymerase V subunit UmuC3e-22103
NC_007516:1086948:1105898110589811071721275Synechococcus sp. CC9605, complete genomeDNA-directed DNA polymerase4e-22103
NC_014733:1073540:1081149108114910824411293Methylovorus sp. MP688 chromosome, complete genomeDNA-directed DNA polymerase1e-21102
NC_014842:19411:4458444584458581275Pantoea sp. At-9b plasmid pPAT9B05, complete sequenceDNA-directed DNA polymerase1e-21102
NC_014733:1573171:1588662158866215899541293Methylovorus sp. MP688 chromosome, complete genomeDNA-directed DNA polymerase1e-21102
NC_012969:1574330:1589660158966015909521293Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeDNA-directed DNA polymerase1e-21102
NC_016609:8251438:8251438825143882527211284Niastella koreensis GR20-10 chromosome, complete genomeDNA-directed DNA polymerase1e-21102
NC_015761:1599000:1604619160461916058841266Salmonella bongori NCTC 12419, complete genomeDNA repair protein2e-21101
NC_008740:1357312:136927113692711369492222Marinobacter aquaeolei VT8, complete genomeNucleotidyltransferase/DNA polymerase involved in DNA repair-like3e-21100
NC_004431:1443968:1468502146850214697701269Escherichia coli CFT073, complete genomeDNA polymerase IV2e-21100
NC_009801:1296488:1321867132186713231351269Escherichia coli E24377A, complete genomeprotein UmuC2e-21100
NC_010473:1245284:1270650127065012719181269Escherichia coli str. K-12 substr. DH10B, complete genomeDNA polymerase V, subunit C2e-21100
NC_012967:1205985:1231336123133612326041269Escherichia coli B str. REL606 chromosome, complete genomeDNA polymerase V subunit UmuC2e-21100
NC_011742:1221416:1245958124595812472261269Escherichia coli S88 chromosome, complete genomeDNA polymerase V subunit UmuC2e-21100
NC_011601:1315746:1337755133775513390231269Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA polymerase V subunit UmuC2e-21100
NC_011751:1446073:1477461147746114787291269Escherichia coli UMN026 chromosome, complete genomeDNA polymerase V subunit UmuC2e-21100
NC_020260:1293860:1306660130666013078411182Cronobacter sakazakii Sp291, complete genomeDNA polymerase V subunit UmuC17e-2199.4
NC_021066:1778000:1784007178400717852721266Raoultella ornithinolytica B6, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair8e-2199
NC_020054:4983691:4993524499352449948101287Fibrella aestuarina BUZ 2 drat genomeDNA polymerase V1e-2098.6
NC_004631:948054:9817399817399830071269Salmonella enterica subsp. enterica serovar Typhi Ty2, completeDNA polymerase IV2e-2097.8
NC_016832:948029:9794149794149806821269Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-2097.8
NC_015703:4483500:4516981451698145182491269Runella slithyformis DSM 19594 chromosome, complete genomeDNA-directed DNA polymerase2e-2097.8
NC_010510:534024:5400675400675413951329Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeDNA-directed DNA polymerase2e-2097.4
NC_014733:1223359:1230133123013312314251293Methylovorus sp. MP688 chromosome, complete genomeDNA-directed DNA polymerase2e-2097.4
NC_011894:7109374:7118741711874171200691329Methylobacterium nodulans ORS 2060, complete genomeUMUC domain protein DNA-repair protein3e-2097.4
NC_012988:4262631:4265341426534142666721332Methylobacterium extorquens DM4, complete genomeDNA polymerase V subunit C3e-2097.1
NC_016816:4129299:417038541703854170612228Pantoea ananatis LMG 5342, complete genomeDNA polymerase V subunit UmuC3e-2097.1
NC_016810:2027311:2037460203746020387281269Salmonella enterica subsp. enterica serovar Typhimurium strDNA repair protein4e-2096.7
NC_016856:2085283:2091297209129720925651269Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA polymerase V subunit UmuC4e-2096.7
NC_016857:2027311:2037460203746020387281269Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA polymerase V subunit UmuC4e-2096.7
NC_016863:2029340:2039489203948920407571269Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA polymerase V subunit UmuC4e-2096.7
NC_017046:2026672:2036821203682120380891269Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA repair protein4e-2096.7
NC_008253:1228485:1251657125165712529251269Escherichia coli 536, complete genomeUmuC protein3e-2096.7
NC_005071:671084:6898236898236910971275Prochlorococcus marinus str. MIT 9313, complete genomeputative UmuC protein5e-2096.3
NC_004349:3938:1007810078113341257Shewanella oneidensis MR-1 plasmid pMR-1, complete sequenceSOS mutagenesis protein RulB6e-2095.9
NC_007963:1552761:1564357156435715656371281Chromohalobacter salexigens DSM 3043, complete genomeDNA-directed DNA polymerase1e-1995.1
NC_011745:1287714:1311024131102413122861263Escherichia coli ED1a chromosome, complete genomeDNA polymerase V subunit UmuC2e-1994.7
NC_011757:276953:2927672927672940981332Methylobacterium chloromethanicum CM4, complete genomeDNA-directed DNA polymerase2e-1994.4
NC_010172:3894652:3897842389784238992781437Methylobacterium extorquens PA1, complete genomeDNA-directed DNA polymerase2e-1994.4
NC_014910:1912552:1919375191937519206611287Alicycliphilus denitrificans BC chromosome, complete genomeDNA-directed DNA polymerase2e-1994.4
NC_003902:3514000:3524399352439935256851287Xanthomonas campestris pv. campestris str. ATCC 33913, completepolymerase V subunit3e-1994
NC_008321:3815940:3837529383752938387851257Shewanella sp. MR-4, complete genomeDNA-directed DNA polymerase5e-1992.8
NC_007508:4476726:448614144861414486437297Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeImpB/MucB/SamB family protein (N-terminal fragment)6e-1992.8
NC_006677:2575345:2579904257990425811661263Gluconobacter oxydans 621H, complete genomeSOS (error prone) mutagenesis protein UmuC9e-1992
NC_011881:1:4351435156311281Arthrobacter chlorophenolicus A6 plasmid pACHL02, completeDNA-directed DNA polymerase2e-1891.3
NC_004459:349500:3706513706513719071257Vibrio vulnificus CMCP6 chromosome I, complete sequenceNucleotidyltransferase/DNA polymerase involved in DNA repair3e-1890.1
NC_020541:1786500:1806286180628618075751290Rhodanobacter sp. 2APBS1, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair4e-1890.1
NC_009927:253250:2550982550982563631266Acaryochloris marina MBIC11017 plasmid pREB2, complete sequenceDNA polymerase V, putative8e-1889
NC_009453:36599:5178151781530791299Arthrobacter sp. Rue61a plasmid pAL1, complete sequenceputative UmuC-like protein1e-1788.6
NC_009052:4168776:4175354417535441766101257Shewanella baltica OS155, complete genomeDNA-directed DNA polymerase2e-1787.4
NC_010334:2615260:2641539264153926427921254Shewanella halifaxensis HAW-EB4, complete genomeDNA-directed DNA polymerase3e-1787
NC_011894:585637:622131622131622415285Methylobacterium nodulans ORS 2060, complete genome4e-1786.7
NC_020054:943945:948777948777949214438Fibrella aestuarina BUZ 2 drat genomeDNA polymerase V7e-1785.9
NC_016901:5130147:5149362514936251506181257Shewanella baltica OS678 chromosome, complete genomeDNA-directed DNA polymerase3e-1683.6
NC_009665:5072413:5091613509161350928691257Shewanella baltica OS185 chromosome, complete genomeDNA-directed DNA polymerase3e-1683.6
NC_009997:5188221:5208740520874052099961257Shewanella baltica OS195, complete genomeDNA-directed DNA polymerase3e-1683.6
NC_010334:2615260:2621348262134826226011254Shewanella halifaxensis HAW-EB4, complete genomeDNA-directed DNA polymerase1e-1582
NC_014532:3596097:3628379362837936296561278Halomonas elongata DSM 2581, complete genomeDNA-directed DNA polymerase2e-1580.9
NC_010943:3069082:3084429308442930857181290Stenotrophomonas maltophilia K279a, complete genomeputative UV protection and mutation protein1e-1168.6
NC_012108:442493:457020457020457433414Desulfobacterium autotrophicum HRM2, complete genomeUmuC29e-1165.5
NC_009778:1222273:1227942122794212291261185Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-0961.6
NC_015740:2998500:2999374299937430005281155Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeimpB/mucB/samB family protein2e-0961.6
NC_007005:2149275:215579421557942155952159Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein8e-0958.9
NC_009656:44500:101261101261101386126Pseudomonas aeruginosa PA7 chromosome, complete genomeprotein UmuC4e-0856.6
NC_005966:2653945:267374126737412673935195Acinetobacter sp. ADP1, complete genomefragment of umuC1e-0652
NC_010725:1419272:1469060146906014702381179Methylobacterium populi BJ001, complete genome3e-0650.8