Pre_GI: BLASTP Hits

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Query: NC_012587:128845:143676 Rhizobium sp. NGR234, complete genome

Start: 143676, End: 147098, Length: 3423

Host Lineage: Sinorhizobium fredii; Sinorhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This organism, much like other Rhizobia, forms a symbiotic relationship with a leguminous plant, such as soybean, cowpea or pigeon pea. Expression of nodulation genes results in production of a nodulation signal which the plant cell recognizes inducing root nodule formation. The plant cell provides carbon compounds for the bacterium to grow on.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009720:1248866:1266535126653512699093375Xanthobacter autotrophicus Py2, complete genometype I restriction enzyme EcoKI subunit R0972
NC_007925:4060635:4061871406187140652513381Rhodopseudomonas palustris BisB18, complete genometype III restriction enzyme, res subunit0970
NC_014034:1036652:1043079104307910464863408Rhodobacter capsulatus SB1003 chromosome, complete genometype I restriction-modification system RcaSBIP subunit R0915
NC_015136:2021799:2035969203596920393223354Burkholderia sp. CCGE1001 chromosome 1, complete sequenceType I site-specific deoxyribonuclease0903
NC_016803:593484:6049616049616083293369Desulfovibrio desulfuricans ND132 chromosome, complete genomeType I site-specific deoxyribonuclease0897
NC_015711:8852850:8864436886443688678223387Myxococcus fulvus HW-1 chromosome, complete genometype I restriction enzyme EcoKI subunit R0895
NC_009434:695582:7215787215787250513474Pseudomonas stutzeri A1501, complete genometype I restriction enzyme EcoKI subunit R0848
NC_012914:5446366:5454894545489454581453252Paenibacillus sp. JDR-2, complete genometype III restriction protein res subunit0795
NC_004347:4441110:4444274444427444478403567Shewanella oneidensis MR-1, complete genometype I restriction-modification system, R subunit0791
NC_009328:814530:8346648346648379093246Geobacillus thermodenitrificans NG80-2 chromosome, complete genometype I restriction enzyme EcoKI subunit R0790
NC_016593:956839:9568399568399600873249Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetype I restriction enzyme EcoKI R protein0779
NC_014206:2807879:2821537282153728247793243Geobacillus sp. C56-T3 chromosome, complete genometype I site-specific deoxyribonuclease0772
NC_021184:207492:2274572274572306933237Desulfotomaculum gibsoniae DSM 7213, complete genomehelicase, type I site-specific restriction-modification system restriction subunit0769
NC_012759:4501206:4519756451975645233223567Escherichia coli BW2952 chromosome, complete genometype I restriction enzyme EcoKI subunit R0753
AC_000091:4569379:4587929458792945914953567Escherichia coli W3110 DNA, complete genomeendonuclease R0753
NC_015844:3159046:3161935316193531651503216Zobellia galactanivorans, complete genometype I restriction enzyme ZgaDI, R subunit0714
NC_015703:3880903:3904133390413339073723240Runella slithyformis DSM 19594 chromosome, complete genometype I site-specific deoxyribonuclease0668
NC_015873:63487:6495164951680703120Megasphaera elsdenii DSM 20460, complete genomehelicase C-terminal domain protein3e-178626
NC_011832:913994:9275799275799302602682Candidatus Methanosphaerula palustris E1-9c, complete genome3e-94347
NC_014814:2588628:2625543262554326282242682Mycobacterium sp. Spyr1 chromosome, complete genomehelicase, type I site-specific restriction-modification system restriction subunit6e-93343
NC_009712:1008000:1010105101010510127862682Candidatus Methanoregula boonei 6A8, complete genometype III restriction enzyme, res subunit1e-91338
NC_013967:2103968:2126758212675821289802223Haloferax volcanii DS2 chromosome, complete genometype I restriction-modification system restriction subunit5e-67256
NC_018691:3437821:3451205345120534539882784Alcanivorax dieselolei B5 chromosome, complete genomeType III restriction enzyme, res subunit family4e-57224
NC_012108:1664341:1683995168399516873933399Desulfobacterium autotrophicum HRM2, complete genomeHsdR12e-56221
NC_018876:1061682:1094265109426510970272763Methanolobus psychrophilus R15 chromosome, complete genometype I site-specific deoxyribonuclease5e-56220
NC_012691:1250385:1251404125140412547753372Tolumonas auensis DSM 9187, complete genometype III restriction protein res subunit2e-55218
NC_014363:1902868:1916052191605219187932742Olsenella uli DSM 7084 chromosome, complete genometype III restriction protein res subunit5e-55217
NC_016943:4799915:4812303481230348150712769Blastococcus saxobsidens DD2, complete genomeRestriction modification system, restriction subunit4e-52207
NC_014217:2760898:2787205278720527899432739Starkeya novella DSM 506 chromosome, complete genometype III restriction protein res subunit5e-52207
NC_020211:554736:5749865749865783993414Serratia marcescens WW4, complete genomeendonuclease R Type I restriction enzyme7e-52206
NC_008751:1043269:1050386105038610531512766Desulfovibrio vulgaris subsp. vulgaris DP4, complete genometype III restriction enzyme, res subunit2e-50202
NC_019977:302454:3126153126153153712757Methanomethylovorans hollandica DSM 15978, complete genomehelicase, type I site-specific restriction-modification system restriction subunit1e-49199
NC_012962:4591295:4591295459129545947083414Photorhabdus asymbiotica, complete genomehypothetical protein1e-49199
NC_011083:4547825:4593159459315945965723414Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III restriction enzyme, res subunit1e-48196
NC_016902:4236680:4246163424616342495763414Escherichia coli KO11FL chromosome, complete genometype III restriction protein res subunit1e-48195
CP002516:4236680:4246163424616342495763414Escherichia coli KO11, complete genometype III restriction protein res subunit1e-48195
CP002185:4750571:4763293476329347667063414Escherichia coli W, complete genometype III restriction enzyme, res subunit1e-48195
NC_012917:3241196:3255289325528932587023414Pectobacterium carotovorum subsp. carotovorum PC1, complete genometype III restriction protein res subunit3e-48194
NC_016612:2009927:2035784203578420391973414Klebsiella oxytoca KCTC 1686 chromosome, complete genometype III restriction enzyme, res subunit1e-47192
NC_014206:411143:4187894187894221303342Geobacillus sp. C56-T3 chromosome, complete genometype I site-specific deoxyribonuclease3e-46187
NC_006510:372826:3812573812573845953339Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system R subunit (endonuclease)1e-45186
NC_017068:2055500:2059346205934620626783333Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative type I restriction-modification system R subunit2e-45185
NC_016887:3286436:3321039332103933244823444Nocardia cyriacigeorgica GUH-2, complete genomerestriction-modification system endonuclease2e-45185
NC_006361:2920028:2929350292935029327933444Nocardia farcinica IFM 10152, complete genomeputative restriction-modification system endonuclease1e-44182
NC_008312:3728329:3736248373624837396073360Trichodesmium erythraeum IMS101, complete genometype III restriction enzyme, res subunit3e-44181
NC_016593:416661:4237054237054270493345Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetype I restriction-modification system R subunit3e-44181
NC_008705:4053070:4065909406590940683202412Mycobacterium sp. KMS, complete genometype III restriction enzyme, res subunit4e-44180
NC_008146:4019711:4031427403142740338382412Mycobacterium sp. MCS, complete genometype III restriction enzyme, res subunit4e-44180
NC_016027:1902854:1928603192860319319983396Gluconacetobacter xylinus NBRC 3288, complete genometype III restriction enzyme, res subunit6e-43177
NC_011979:3112911:3128150312815031308762727Geobacter sp. FRC-32, complete genometype III restriction protein res subunit3e-42174
NC_011295:1263500:1270521127052112727672247Coprothermobacter proteolyticus DSM 5265, complete genometype I restriction-modification system, R subunit2e-41172
NC_007908:1108494:1131262113126211346783417Rhodoferax ferrireducens T118, complete genometype III restriction enzyme, res subunit4e-41171
NC_014643:2056280:2059221205922120626463426Rothia dentocariosa ATCC 17931 chromosome, complete genometype I restriction-modification system R subunit7e-41170
NC_010814:1441327:1461750146175014641522403Geobacter lovleyi SZ, complete genomeEcoEI R domain protein9e-41169
NC_019942:1270060:1304891130489113074132523Aciduliprofundum sp. MAR08-339, complete genomehelicase, type I site-specific restriction-modification system restriction subunit1e-39166
NC_013203:202008:2336162336162369933378Atopobium parvulum DSM 20469, complete genometype III restriction protein res subunit1e-39166
NC_010337:616304:6251956251956275342340Heliobacterium modesticaldum Ice1, complete genometype i restriction-modification system, r subunit5e-39164
NC_013730:3729626:3742064374206437445052442Spirosoma linguale DSM 74, complete genomeType I site-specific deoxyribonuclease6e-39163
NC_015737:449914:4573824573824607593378Clostridium sp. SY8519, complete genomehypothetical protein2e-38162
NC_007645:5160133:5178827517882751823843558Hahella chejuensis KCTC 2396, complete genomeType I site-specific restriction-modification system, R (restriction) subunit and related helicase2e-38162
NC_016610:2077603:2089350208935020920612712Tannerella forsythia ATCC 43037 chromosome, complete genomehelicase C-terminal domain-containing protein1e-38162
NC_009338:817854:8251378251378285503414Mycobacterium gilvum PYR-GCK chromosome, complete genometype III restriction enzyme, res subunit1e-38162
NC_019897:3613830:3635423363542336387763354Thermobacillus composti KWC4 chromosome, complete genomehelicase, type I site-specific restriction-modification system restriction subunit3e-38161
NC_014640:6815264:6820902682090268243573456Achromobacter xylosoxidans A8 chromosome, complete genometype III restriction enzyme, Res subunit9e-38159
NC_015578:3495034:3504553350455335079483396Treponema primitia ZAS-2 chromosome, complete genometype I restriction-modification system R subunit2e-37159
NC_013156:226215:2450712450712475212451Methanocaldococcus fervens AG86, complete genomeType I site-specific deoxyribonuclease2e-37158
NC_009656:6224221:6246041624604162484072367Pseudomonas aeruginosa PA7 chromosome, complete genometype I restriction-modification system subunit R6e-37157
NC_008577:2402165:2420829242082924242453417Shewanella sp. ANA-3 chromosome 1, complete sequencetype III restriction enzyme, res subunit5e-37157
NC_011138:3881446:3895467389546738988923426Alteromonas macleodii 'Deep ecotype', complete genomeType I site-specific restriction-modification system, R (restriction) subunit and related helicase5e-37157
NC_015953:3227000:3232508323250832359693462Streptomyces sp. SirexAA-E chromosome, complete genomeType I site-specific deoxyribonuclease4e-37157
NC_010995:764567:7765167765167789062391Cellvibrio japonicus Ueda107, complete genometype I restriction-modification system, R subunit8e-37156
NC_015660:3174424:3185000318500031874502451Geobacillus thermoglucosidasius C56-YS93 chromosome, completetype I site-specific deoxyribonuclease1e-36155
NC_016745:1548426:1559776155977615622052430Oceanimonas sp. GK1 chromosome, complete genometype I restriction-modification system restriction2e-36155
NC_009051:1074993:1085337108533710881742838Methanoculleus marisnigri JR1, complete genometype III restriction enzyme, res subunit5e-36154
NC_009925:2240871:2246217224621722485712355Acaryochloris marina MBIC11017, complete genometype I restriction-modification system, R subunit, putative5e-36154
NC_009925:647752:6582026582026616093408Acaryochloris marina MBIC11017, complete genometype I restriction enzyme R protein6e-36153
NC_009512:5166459:5166459516645951688312373Pseudomonas putida F1, complete genomeEcoEI R, C-terminal domain protein2e-35152
NC_017986:1885613:1912423191242319147952373Pseudomonas putida ND6 chromosome, complete genomeEcoEI R domain-containing protein2e-35152
NC_010170:4196197:4216612421661242186512040Bordetella petrii, complete genometype I restriction-modification enzyme R subunit2e-35151
NC_008346:584305:6103396103396136863348Syntrophomonas wolfei subsp. wolfei str. Goettingen, completetype I restriction-modification system R subunit (endonuclease)3e-35151
NC_014306:4376012:4398927439892744013622436Erwinia billingiae Eb661, complete genomeType I restriction enzyme EcoAI R protein3e-35151
NC_009715:1470419:1486775148677514890602286Campylobacter curvus 525.92 chromosome, complete genometype I restriction-modification system, R subunit8e-35150
NC_016803:1646342:1663058166305816658682811Desulfovibrio desulfuricans ND132 chromosome, complete genomeType I site-specific deoxyribonuclease5e-35150
NC_011071:1178423:1182895118289511862753381Stenotrophomonas maltophilia R551-3, complete genometype III restriction protein res subunit5e-35150
NC_014655:130636:1452841452841476802397Leadbetterella byssophila DSM 17132 chromosome, complete genometype i site-specific deoxyribonuclease1e-34149
NC_014394:3114648:3128449312844931307972349Gallionella capsiferriformans ES-2 chromosome, complete genomeType I site-specific deoxyribonuclease1e-34149
NC_002947:5386489:5393057539305753954202364Pseudomonas putida KT2440, complete genometype I restriction-modification system, R subunit1e-34149
NC_013406:1217385:1238848123884812422013354Paenibacillus sp. Y412MC10 chromosome, complete genometype III restriction protein res subunit5e-34147
NC_004459:2025436:2028111202811120305552445Vibrio vulnificus CMCP6 chromosome I, complete sequenceType I restriction enzyme EcoEI R protein5e-34147
NC_011899:2165814:2181897218189721842092313Halothermothrix orenii H 168, complete genomeEcoEI R domain protein4e-34147
NC_004603:370320:3934483934483958922445Vibrio parahaemolyticus RIMD 2210633 chromosome I, completetype I restriction enzyme R protein9e-34146
NC_014965:997344:1012394101239410148712478Vibrio vulnificus MO6-24/O chromosome I, complete sequencetype I restriction-modification system restriction subunit R1e-33146
NC_004757:2730057:2730057273005727328582802Nitrosomonas europaea ATCC 19718, complete genomeDEAD/DEAH box helicase2e-33145
NC_013720:5769910:5790098579009857928962799Pirellula staleyi DSM 6068, complete genometype III restriction protein res subunit6e-33144
NC_008595:5168941:5174437517443751768002364Mycobacterium avium 104, complete genometype I restriction-modification system, R subunit7e-33143
NC_020541:2551539:2557809255780925605142706Rhodanobacter sp. 2APBS1, complete genomehelicase, type I site-specific restriction-modification system restriction subunit1e-32142
NC_011144:1073944:1089242108924210916892448Phenylobacterium zucineum HLK1, complete genometype I restriction-modification system, R subunit8e-32140
NC_015677:1282865:1288035128803512904852451Ramlibacter tataouinensis TTB310 chromosome, complete genometype I site-specific restriction-modification system, R subunit6e-32140
NC_008782:2781229:2787465278746527899182454Acidovorax sp. JS42, complete genomeEcoEI R, C-terminal domain protein6e-32140
NC_009429:401500:4239974239974264442448Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein5e-32140
NC_019757:5748432:5756207575620757585912385Cylindrospermum stagnale PCC 7417, complete genomehelicase, type I site-specific restriction-modification system restriction subunit4e-32140
NC_014762:890914:8957698957698981202352Sulfuricurvum kujiense DSM 16994 chromosome, complete genometype i site-specific deoxyribonuclease4e-32140
NC_008358:2638245:2689150268915026925543405Hyphomonas neptunium ATCC 15444, complete genometype I restriction-modification system, R subunit9e-32139
NC_011992:1234610:1252504125250412549872484Acidovorax ebreus TPSY, complete genomeEcoEI R domain protein1e-31139
NC_014166:1424754:1433522143352214359302409Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeType I site-specific deoxyribonuclease3e-31138
NC_015945:1908895:1922906192290619263913486Muricauda ruestringensis DSM 13258 chromosome, complete genomeType I site-specific deoxyribonuclease6e-31137
NC_009943:1499111:1500676150067615030392364Candidatus Desulfococcus oleovorans Hxd3, complete genometype III restriction protein res subunit1e-30135
NC_015167:3469968:3481685348168534839792295Cellulophaga lytica DSM 7489 chromosome, complete genomeType I site-specific deoxyribonuclease5e-30134
NC_013889:1740858:1755993175599317584072415Thioalkalivibrio sp. K90mix chromosome, complete genomeType I site-specific deoxyribonuclease3e-30134
NC_014034:1418681:1421843142184314242962454Rhodobacter capsulatus SB1003 chromosome, complete genometype I restriction-modification system RcaSBIIIP subunit R8e-30133
NC_014727:368698:3760893760893783952307Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,type i site-specific deoxyribonuclease restriction subunit1e-29133
NC_009943:940835:9542409542409565912352Candidatus Desulfococcus oleovorans Hxd3, complete genomeEcoEI R domain protein1e-29132
NC_011206:200000:2112852112852135672283Acidithiobacillus ferrooxidans ATCC 53993, complete genometype III restriction protein res subunit2e-29131
NC_011761:1357799:1366160136616013684422283Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completetype I restriction-modification system, R subunit4e-29131
NC_015216:1102837:1120982112098211237172736Methanobacterium sp. AL-21 chromosome, complete genometype i site-specific deoxyribonuclease6e-29130
NC_015500:2866027:2881678288167828840742397Treponema brennaborense DSM 12168 chromosome, complete genomeType I site-specific deoxyribonuclease4e-29130
NC_018876:2628966:2676295267629526786552361Methanolobus psychrophilus R15 chromosome, complete genometype III restriction protein res subunit1e-28129
NC_011145:1732499:1743021174302117453512331Anaeromyxobacter sp. K, complete genometype III restriction protein res subunit4e-28127
NC_009256:277020:2984912984913008752385Burkholderia vietnamiensis G4 chromosome 1, complete sequenceEcoEI R domain-containing protein4e-28127
NC_011146:4070000:4079439407943940818472409Geobacter bemidjiensis Bem, complete genometype III restriction protein res subunit4e-27124
NC_009720:870194:8754428754428778172376Xanthobacter autotrophicus Py2, complete genomeEcoEI R domain-containing protein1e-26122
NC_009974:53865:6562665626683252700Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02, completetype III restriction protein res subunit1e-25119
NS_000195:526983:5479945479945505192526Candidatus Cloacamonas acidaminovoranshypothetical protein2e-24115
NC_013959:1059004:1069825106982510723682544Sideroxydans lithotrophicus ES-1 chromosome, complete genometype III restriction protein res subunit3e-22108
NC_021177:7462000:7476379747637974792732895Streptomyces fulvissimus DSM 40593, complete genomeType III restriction enzyme, res subunit3e-21105
NC_014624:1675500:1676158167615816779691812Eubacterium limosum KIST612 chromosome, complete genomeDNA or RNA helicases of superfamily II2e-21105
NC_019978:1066000:1066587106658710691782592Halobacteroides halobius DSM 5150, complete genomeDNA/RNA helicase, superfamily I2e-1585.9
NC_015602:1810500:1813312181331218161372826Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeDNA/RNA helicase, DEAD/DEAH box family8e-1583.6
NC_015681:1558873:1568001156800115696801680Thermodesulfatator indicus DSM 15286 chromosome, complete genometype III restriction protein res subunit2e-1379
NC_015601:627217:6340726340726356611590Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeDNA/RNA helicase4e-1377.8
NC_014618:1593360:1609002160900216107621761Enterobacter cloacae SCF1 chromosome, complete genometype III restriction protein res subunit5e-1377.4
NC_010067:660659:6802536802536820131761Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-1377.4
NC_014098:3008951:3026314302631430281551842Bacillus tusciae DSM 2912 chromosome, complete genome2e-1275.9
NC_010102:683444:7195017195017212611761Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1173.2
NC_016863:2324293:2324293232429323260531761Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative ATP-dependent helicase1e-1172.8
NC_015214:48999:5073950739535642826Lactobacillus acidophilus 30SC chromosome, complete genomephage DEAD box family helicase2e-1172.8
NC_014724:59000:5994359943627682826Lactobacillus amylovorus GRL 1112 chromosome, complete genomephage DEAD box family helicase2e-1172.4
NC_011147:682897:7047587047587065181761Salmonella enterica subsp. enterica serovar Paratyphi A strhelicase2e-1172.4
NC_006511:682863:7048127048127065721761Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative helicase2e-1172.4
NC_016112:1330500:1337935133793513401662232Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein4e-1171.6
NC_015566:3622385:3622385362238536241421758Serratia sp. AS12 chromosome, complete genometype III restriction protein res subunit2e-1068.9
NC_020064:3157656:3158630315863031603871758Serratia marcescens FGI94, complete genomeDNA/RNA helicase, superfamily II2e-0965.9
NC_013961:2370994:2371887237188723736411755Erwinia amylovora, complete genomeUncharacterized protein yejH4e-0964.7
NC_013971:2408522:2409415240941524111691755Erwinia amylovora ATCC 49946 chromosome, complete genomeDNA helicase4e-0964.7
NC_010723:2082750:2084165208416520865672403Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein1e-0863.2
NC_002737:533291:5375715375715391541584Streptococcus pyogenes M1 GAS, complete genomeputative DEAD box family helicase, phage associated2e-0759.3
NC_021066:839734:8476818476818506953015Raoultella ornithinolytica B6, complete genometype III restriction protein res subunit3e-0758.5
NC_004578:20738:4744847448523584911Pseudomonas syringae pv. tomato str. DC3000, complete genomehelicase domain protein6e-0757.4
NC_016026:1224129:1236374123637412392052832Micavibrio aeruginosavorus ARL-13 chromosome, complete genomeputative type I restriction enzyme R protein2e-0655.8
NC_005090:1082213:1086874108687410896932820Wolinella succinogenes DSM 1740, complete genomeHSDR PROTEIN PROBABLE TYPE I RESTRICTION ENZYME RESTRICTIONCHAIN2e-0655.8
NC_017068:1143515:1186826118682611898583033Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative type I restriction-modification system R subunit4e-0654.7
NC_007164:62816:6655466554691452592Corynebacterium jeikeium K411, complete genomeputative helicase6e-0654.3