Pre_GI: BLASTP Hits

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Query: NC_011147:2247460:2256003 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2256003, End: 2256158, Length: 156

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:598000:605550605550605735186Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-23108
NC_004631:2366335:237536623753662375551186Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-23108
NC_010102:2495441:250422325042232504492270Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-23107
NC_003197:606048:613593613593613781189Salmonella typhimurium LT2, complete genomeintegrase4e-23106
NC_016856:606742:614287614287614475189Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegrase4e-23106
NC_016857:604792:613081613081613269189Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74integrase4e-23106
NC_016863:606742:614287614287614475189Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1integrase4e-23106
NC_011094:593100:6007016007016018641164Salmonella enterica subsp. enterica serovar Schwarzengrund strprophage DLP12 integrase1e-0858.2
NC_000913:558920:5640385640385652011164Escherichia coli K12, complete genomeDLP12 prophage; predicted integrase4e-0856.6
NC_010473:498252:5033705033705045331164Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted integrase4e-0856.6
AC_000091:558920:5640385640385652011164Escherichia coli W3110 DNA, complete genomepredicted integrase4e-0856.6
NC_012759:461680:4667984667984679611164Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative integrase4e-0856.6
NC_011751:643976:6449436449436461061164Escherichia coli UMN026 chromosome, complete genomeputative integrase; DLP12 prophage2e-0754.3
NC_011415:600375:6083326083326094951164Escherichia coli SE11 chromosome, complete genomephage integrase2e-0754.3
NC_012947:3231893:3247313324731332484761164Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase2e-0754.3
NC_012967:531000:5369295369295380921164Escherichia coli B str. REL606 chromosome, complete genomeputative integrase2e-0754.3
NC_011750:527470:532595532595532762168Escherichia coli IAI39 chromosome, complete genome3e-0753.9
NC_011205:609464:6170646170646182271164Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853prophage DLP12 integrase5e-0753.1
NC_011083:374000:3768503768503780131164Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,site-specific recombinase, phage integrase family7e-0649.3
NC_006905:368942:3728473728473740101164Salmonella enterica subsp. enterica serovar Choleraesuis strInt7e-0649.3
NC_016860:364981:3688873688873700501164Salmonella enterica subsp. enterica serovar Typhimurium strintegrase7e-0649.3