Pre_GI: BLASTP Hits

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Query: NC_010658:1933605:1956336 Shigella boydii CDC 3083-94, complete genome

Start: 1956336, End: 1957385, Length: 1050

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:1596278:1615476161547616165341059Escherichia coli O111:H- str. 11128, complete genomeputative DNA methylase0681
NC_011601:1269500:1286139128613912871881050Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA methylase0673
NC_009801:1419324:1436177143617714372231047Escherichia coli E24377A, complete genomeDNA methylase0640
NC_020181:5217000:5230273523027352313521080Enterobacter aerogenes EA1509E, complete genomeCOG0863: DNA modification methylase3e-166584
NC_014562:983398:1001266100126610023061041Pantoea vagans C9-1 chromosome, complete genomehypothetical protein2e-153541
NC_013971:335247:345068345068345652585Erwinia amylovora ATCC 49946 chromosome, complete genomeDNA methylase9e-59227
NC_004369:1552847:1558925155892515600371113Corynebacterium efficiens YS-314, complete genomehypothetical protein9e-53207
NC_013961:3413011:342573034257303426224495Erwinia amylovora, complete genomeputative DNA adenine methylase2e-48193
NC_011748:1408280:142512214251221425448327Escherichia coli 55989, complete genome1e-47190
CU928145:1408280:142512214251221425448327Escherichia coli 55989 chromosome, complete genomefragment of putative DNA adenine methyltransferase ( DNA methylase) from phage origin (partial)1e-47190
NC_010546:4590994:460997546099754610862888Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceputative DNA methylase N-4/N-65e-28125
NC_015434:228912:239951239951240328378Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein1e-1584.3
NC_013929:3299736:3347147334714733489251779Streptomyces scabiei 87.22 chromosome, complete genomerestriction-modification system methyltransferase1e-1377.4
NC_013731:11605:3985539855417891935Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequenceDNA methylase N-4/N-6 domain protein3e-1273.2
NC_009255:1250939:130151013015101302361852Burkholderia vietnamiensis G4 chromosome 2, complete sequenceDNA methylase N-4/N-6 domain-containing protein2e-1170.1
NC_016812:152831:1621551621551638941740Sinorhizobium fredii HH103, complete genomemodification methylase EcaI4e-1169.3
NC_014033:1152994:1164840116484011660841245Prevotella ruminicola 23 chromosome, complete genomeDNA (cytosine-5-)-methyltransferase1e-0964.3
NC_002978:549454:5722595722595734851227Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW4, DNA methylase2e-0963.9
NC_015873:1119500:112830311283031129109807Megasphaera elsdenii DSM 20460, complete genomeDNA (Cytosine-5-)-methyltransferase2e-0963.5
NC_016616:2997348:3006565300656530077311167Dechlorosoma suillum PS chromosome, complete genomeadenine specific DNA methylase Mod3e-0963.2
NC_015977:2807782:2829379282937928310581680Roseburia hominis A2-183 chromosome, complete genomeadenine specific DNA methylase Mod3e-0963.2
NC_002978:234082:2486082486082498371230Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW1, DNA methylase3e-0962.8
NC_010067:4149298:416498041649804165864885Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-0962.8
NC_012416:1079661:1104933110493311061591227Wolbachia sp. wRi, complete genomeDNA methylase5e-0962.4
NC_012416:573202:5984745984745997001227Wolbachia sp. wRi, complete genomeDNA methylase5e-0962.4
CP002207:3520874:3530675353067535317571083Bacillus atrophaeus 1942, complete genomeDNA methylase N-4/N-6 domain-containing protein5e-0962.4
NC_014639:3520874:3530675353067535317571083Bacillus atrophaeus 1942 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein5e-0962.4
NC_010981:1371265:1388212138821213894441233Wolbachia pipientis, complete genomePhage related DNA methylase8e-0961.6
NC_010981:242500:2620412620412632731233Wolbachia pipientis, complete genomePhage related DNA methylase8e-0961.6
NC_010981:314745:3355613355613367931233Wolbachia pipientis, complete genomePhage related DNA methylase8e-0961.6
NC_007404:1570000:1578754157875415810932340Thiobacillus denitrificans ATCC 25259, complete genomeadenine specific DNA-methyltransferase8e-0961.6
NC_009455:1025915:1035825103582510380262202Dehalococcoides sp. BAV1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein9e-0961.6
NC_007973:2888824:2903604290360429047701167Ralstonia metallidurans CH34 chromosome 1, complete sequenceDNA methylase N-4/N-61e-0861.2
NC_010125:955863:973775973775974233459Gluconacetobacter diazotrophicus PAl 5, complete genome2e-0860.5
NC_009256:2945059:2954731295473129560321302Burkholderia vietnamiensis G4 chromosome 1, complete sequenceDNA methylase N-4/N-6 domain-containing protein2e-0860.1
NC_006582:883922:8929238929238941341212Bacillus clausii KSM-K16, complete genomeadenine-specific DNA methylase3e-0859.7
NC_010125:381711:393090393090393770681Gluconacetobacter diazotrophicus PAl 5, complete genomeputative modification methylase3e-0859.7
NC_014330:1324500:133930513393051340087783Brachyspira pilosicoli 95/1000 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein4e-0859.3
NC_018604:2871328:288627128862712887047777Brachyspira pilosicoli WesB complete genomeDNA methylase N-4/N-6 domain-containing protein4e-0859.3
NC_009767:2866668:2879315287931528804241110Roseiflexus castenholzii DSM 13941, complete genomeDNA methylase N-4/N-6 domain protein4e-0859.3
NC_011365:1103927:110848411084841109161678Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein4e-0859.3
NC_015562:1816000:183292918329291833705777Methanotorris igneus Kol 5 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein4e-0859.3
NC_017080:3712000:3725298372529837275532256Phycisphaera mikurensis NBRC 102666, complete genomeputative modification methylase4e-0859.3
NC_018607:2747462:276222627622262763002777Brachyspira pilosicoli B2904 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein4e-0859.3
NC_011353:2957962:296439129643912964543153Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-0859.3
NC_013008:2910567:291926229192622919414153Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-0859.3
NC_012778:1819559:183252918325291833332804Eubacterium eligens ATCC 27750, complete genomesite-specific DNA-methyltransferase (adenine-specific)6e-0858.9
NC_008686:95326:110943110943111620678Paracoccus denitrificans PD1222 chromosome 1, complete sequenceDNA methylase N-4/N-6 domain protein6e-0858.5
NC_010158:92819:108442108442109119678Yersinia pestis Angola plasmid pMT-pPCP, complete sequenceDNA methylase1e-0758.2
NC_005815:61148:893978939790074678Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative methylase1e-0758.2
NC_004838:51013:666486664867325678Yersinia pestis KIM plasmid pMT-1, complete sequencehypothetical protein1e-0758.2
NC_008118:56777:947909479095467678Yersinia pestis Nepal516 plasmid pMT, complete sequenceDNA methylase1e-0758.2
NC_003134:64672:646726467265349678Yersinia pestis CO92 plasmid pMT1, complete sequenceputative DNA methylase1e-0758.2
NC_009378:106193:130882130882131559678Yersinia pestis Pestoides F plasmid MT, complete sequenceputative methylase1e-0758.2
NC_011831:4043802:4055528405552840566371110Chloroflexus aggregans DSM 9485, complete genomeDNA methylase N-4/N-6 domain protein9e-0858.2
NC_009621:389181:3934683934683955912124Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequenceadenine-specific DNA-methyltransferase9e-0858.2
NC_010162:2469915:2481320248132024831551836Sorangium cellulosum 'So ce 56', complete genomehypothetical protein1e-0757.8
NC_016585:417979:435333435333436124792Azospirillum lipoferum 4B plasmid AZO_p1, complete sequenceputative phage site-specific DNA-methyltransferase1e-0757.8
NC_014150:2201251:223851922385192239298780Brachyspira murdochii DSM 12563 chromosome, complete genomeDNA methylase N-4/N-6 domain protein1e-0757.8
NC_014253:312354:329319329319330101783Methanohalobium evestigatum Z-7303 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0757.4
NC_014814:3926676:3931021393102139320791059Mycobacterium sp. Spyr1 chromosome, complete genomeDNA modification methylase2e-0757
NC_007514:1840971:1855303185530318563581056Chlorobium chlorochromatii CaD3, complete genomeputative type II DNA modification enzyme (methyltransferase)2e-0757
NC_010175:398453:4104884104884116901203Chloroflexus aurantiacus J-10-fl, complete genomeDNA methylase N-4/N-6 domain protein2e-0757
NC_012032:398419:4104544104544116561203Chloroflexus sp. Y-400-fl, complete genomeDNA methylase N-4/N-6 domain protein2e-0757
NC_010524:4788753:4795843479584347971861344Leptothrix cholodnii SP-6, complete genomeDNA methylase N-4/N-6 domain protein2e-0756.6
NC_017190:2130651:216542221654222166258837Bacillus amyloliquefaciens LL3 chromosome, complete genomeDNA modification methylase2e-0756.6
NC_013716:2764550:276959127695912770322732Citrobacter rodentium ICC168, complete genomeputative prophage DNA methylase3e-0756.6
NC_010546:1853825:185626218562621857116855Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceprobable DNA-methyltransferase4e-0755.8
NC_007434:1712000:1782557178255717836931137Burkholderia pseudomallei 1710b chromosome I, complete sequenceDNA methylase6e-0755.5
NC_013235:5127148:5158882515888251599401059Nakamurella multipartita DSM 44233, complete genomeDNA methylase N-4/N-6 domain protein6e-0755.5
NC_007650:1192310:1209408120940812105441137Burkholderia thailandensis E264 chromosome II, complete sequencegp566e-0755.5
NC_015666:3606053:3624377362437736261161740Halopiger xanaduensis SH-6 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0654.7
NC_009253:897684:9261549261549276711518Desulfotomaculum reducens MI-1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0654.7
NC_010804:996837:1034583103458310358481266Burkholderia multivorans ATCC 17616 chromosome 1, completeputative DNA methylase1e-0654.7
NC_010084:2484000:2488925248892524901901266Burkholderia multivorans ATCC 17616 chromosome 1, completeDNA methylase N-4/N-6 domain-containing protein1e-0654.7
NC_004851:157675:164527164527165210684Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein1e-0654.7
NC_017319:155958:163189163189163872684Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein1e-0654.7
NC_015711:4319648:433960343396034340313711Myxococcus fulvus HW-1 chromosome, complete genomeputative DNA methyltransferase9e-0754.7
NC_009787:17344:180141801418697684Escherichia coli E24377A plasmid pETEC_35, complete sequenceDNA methylase family protein9e-0754.7
NC_009511:1746631:1754713175471317561641452Sphingomonas wittichii RW1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0654.3
NC_011831:2728932:273633327363332737247915Chloroflexus aggregans DSM 9485, complete genomeDNA methylase N-4/N-6 domain protein1e-0654.3
NC_002128:35000:393633936340046684Escherichia coli O157:H7 str. Sakai plasmid pO157, completehemagglutinin-associated protein1e-0654.3
NC_006856:95830:960529605296735684Salmonella enterica subsp. enterica serovar Choleraesuis strputative site-specific DNA methyl transferase1e-0654.3
NC_007414:56508:619386193862621684Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencehypothetical protein1e-0654.3
NC_011365:1171536:120245612024561203127672Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-0653.9
NC_007645:2533274:2547622254762225488121191Hahella chejuensis KCTC 2396, complete genomeBamHI-like site-specific methyltransferase2e-0653.9
NC_009253:897684:919365919365920264900Desulfotomaculum reducens MI-1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-0653.9
NC_015063:1:166811668117325645Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequenceDNA methylase N-4/N-6 domain protein2e-0653.9
NC_009659:3103601:3103601310360131048361236Janthinobacterium sp. Marseille chromosome, complete genomeDNA modification methylase2e-0653.5
NC_018604:758819:762103762103763008906Brachyspira pilosicoli WesB complete genomeDNA methylase N-4/N-6 domain-containing protein2e-0653.5
NC_011283:1811000:183713718371371838030894Klebsiella pneumoniae 342 chromosome, complete genomeDNA methylase3e-0653.1
NC_008825:4025705:403737340373734038056684Methylibium petroleiphilum PM1, complete genomeDNA modification methylase-like protein3e-0653.1
NC_016803:2431672:244255924425592443287729Desulfovibrio desulfuricans ND132 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-0653.1
NC_003485:579946:590462590462591250789Streptococcus pyogenes MGAS8232, complete genomehypothetical protein4e-0652.8
NC_008024:548165:561046561046561834789Streptococcus pyogenes MGAS10750, complete genomeAdenine-specific methyltransferase4e-0652.8
NC_003485:1228149:123171712317171232472756Streptococcus pyogenes MGAS8232, complete genomehypothetical protein4e-0652.8
NC_009332:653474:663753663753664517765Streptococcus pyogenes str. Manfredo chromosome, complete genomephage DNA methylase4e-0652.8
NC_012658:1405788:140578814057881406594807Clostridium botulinum Ba4 str. 657 chromosome, complete genomeDNA methylase5e-0652.4
NC_009767:4819000:483030748303074831305999Roseiflexus castenholzii DSM 13941, complete genomeDNA methylase N-4/N-6 domain protein5e-0652.4