Pre_GI: BLASTP Hits

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Query: NC_010501:3013103:3016141 Pseudomonas putida W619, complete genome

Start: 3016141, End: 3016962, Length: 822

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:3404000:340862234086223409431810Pseudomonas putida KT2440, complete genometranscriptional regulator, AraC family8e-100363
NC_017986:5509569:551342855134285514114687Pseudomonas putida ND6 chromosome, complete genomeAraC family transcriptional regulator1e-78292
NC_009436:2056000:206845420684542069380927Enterobacter sp. 638, complete genomeAraC family transcriptional regulator3e-70265
NC_004129:3452885:348470734847073485513807Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, AraC family5e-66251
NC_016002:1326500:134962213496221350446825Pseudogulbenkiania sp. NH8B, complete genomeAraC family transcriptional regulator2e-35149
NC_010552:1212000:123064912306491231497849Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, AraC family8e-34144
NC_008751:607209:607209607209608048840Desulfovibrio vulgaris subsp. vulgaris DP4, complete genometranscriptional regulator, AraC family2e-27122
NC_014844:762794:781918781918782757840Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeAraC type helix-turn-helix- domain-containing protein1e-26120
NC_015589:38418:583045830459131828Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehelix-turn-helix- domain-containing protein AraC type9e-1890.9
NC_016633:541559:555866555866556687822Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeDNA-binding domain-containing protein1e-1790.1
NC_009654:4624459:463007746300774630919843Marinomonas sp. MWYL1, complete genomeAraC family transcriptional regulator2e-1686.3
NC_015559:3511231:351357435135743514419846Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeAraC family transcriptional regulator2e-1686.3
NC_009092:1684467:168524516852451686084840Shewanella loihica PV-4, complete genometranscriptional regulator, AraC family4e-1685.5
NC_004129:5723787:575189957518995752744846Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, AraC family1e-1583.6
NC_005773:5310339:532689853268985327734837Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, AraC family2e-1479.3
NC_015733:2194676:220721222072122208114903Pseudomonas putida S16 chromosome, complete genomeAraC family transcriptional regulator3e-1479
NC_014624:2569604:257139625713962572262867Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein6e-1478.2
NC_016445:2593800:262314126231412623944804Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeAraC/XylS family transcriptional regulator1e-1377.4
NC_016944:168530:197883197883198695813Vibrio cholerae IEC224 chromosome I, complete sequenceAraC/XylS family transcriptional regulator1e-1377
NC_002505:168532:197873197873198685813Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator, AraC/XylS family1e-1377
NC_010002:3357752:337748733774873378314828Delftia acidovorans SPH-1, complete genometranscriptional regulator, AraC family2e-1376.6
NC_003888:4613000:461515446151544615969816Streptomyces coelicolor A3(2), complete genomeAraC-family transcriptional regulator8e-1374.3
NC_003155:4906639:492314449231444923956813Streptomyces avermitilis MA-4680, complete genomeAraC-family transcriptional regulator2e-1272.8
NC_020291:552104:571737571737572579843Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, AraC family3e-1272.4
NC_008392:1029134:103421010342101034986777Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, AraC family3e-1272.4
NC_011985:3869998:388680038868003887690891Agrobacterium radiobacter K84 chromosome 1, complete genometranscriptional regulator protein3e-1272.4
NC_016047:345491:350438350438351265828Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeAraC/XylS family transcriptional regulator3e-1272.4
NC_015957:7249873:725992672599267260753828Streptomyces violaceusniger Tu 4113 chromosome, complete genomeAraC family transcriptional regulator8e-1271.2
NC_010557:679656:702640702640703509870Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, AraC family7e-1271.2
NC_016631:6081384:609364760936476094531885Granulicella mallensis MP5ACTX8 chromosome, complete genomeAraC family transcriptional regulator1e-1170.9
NC_016816:2925459:292545929254592926304846Pantoea ananatis LMG 5342, complete genomeAraC family transcriptional regulator2e-1170.1
NC_006322:203932:227318227318227626309Bacillus licheniformis ATCC 14580, complete genomeYbfI12e-1169.7
NC_020260:2725201:273201127320112732829819Cronobacter sakazakii Sp291, complete genomeAraC family transcriptional regulator4e-1168.9
NC_016584:487613:499304499304500050747Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator3e-1168.9
NC_012881:1062629:106437510643751065232858Desulfovibrio salexigens DSM 2638, complete genometranscriptional regulator, AraC family5e-1168.6
NC_020453:7826358:785191078519107852845936Agromonas oligotrophica S58 DNA, complete genomeAraC family transcriptional regulator2e-1066.2
NC_016631:3245501:325872632587263259574849Granulicella mallensis MP5ACTX8 chromosome, complete genomeAraC family transcriptional regulator3e-1065.9
NC_015065:162317:202038202038202922885Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequencetranscriptional regulator, AraC family4e-1065.5
NC_015690:2553837:256220525622052562981777Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC protein, arabinose-binding/dimerization4e-1065.5
NC_016935:3103430:311173231117323112508777Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator4e-1065.5
NC_004547:667988:688832688832689677846Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeAraC-family transcriptional regulator6e-1065.1
NC_010681:1234500:125237712523771253267891Burkholderia phytofirmans PsJN chromosome 1, complete sequencetranscriptional regulator, AraC family7e-1064.7
NC_010681:1234500:125113612511361252074939Burkholderia phytofirmans PsJN chromosome 1, complete sequencetranscriptional regulator, AraC family2e-0963.5
NC_015410:2505168:251160125116012512404804Pseudomonas mendocina NK-01 chromosome, complete genomeAraC family transcriptional regulator1e-0963.5
NC_015186:2197236:221069822106982211576879Acidiphilium multivorum AIU301, complete genomeAraC family transcriptional regulator4e-0962
NC_014963:2759978:277130727713072772194888Terriglobus saanensis SP1PR4 chromosome, complete genomeAraC family transcriptional regulator7e-0961.2
NC_013406:3672857:3709192370919237107811590Paenibacillus sp. Y412MC10 chromosome, complete genomeAraC family transcriptional regulator9e-0960.8
NC_004547:843475:846356846356847111756Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeAraC-family transcriptional regulator1e-0860.5
NC_006347:451216:4549344549344565831650Bacteroides fragilis YCH46, complete genomeC-terminal part of two-component system sensor histidine kinase/response regulator hybrid2e-0860.1
NC_016776:449150:4528684528684545171650Bacteroides fragilis 638R, complete genomeputative two-component system sensor histidine kinase2e-0860.1
NC_003228:401513:4015134015134031621650Bacteroides fragilis NCTC 9343, complete genomeputative two-component system sensor histidine kinase2e-0859.7
NC_013131:7437831:744729274472927448035744Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, AraC family2e-0859.7
NC_014963:2759978:277227027722702773157888Terriglobus saanensis SP1PR4 chromosome, complete genomeAraC family transcriptional regulator5e-0858.5
NC_010501:3448389:346606534660653466964900Pseudomonas putida W619, complete genometranscriptional regulator, AraC family4e-0858.5
NC_007952:3196085:323128132312813232249969Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, AraC family6e-0858.2
NC_009348:2362163:238571223857122386632921Aeromonas salmonicida subsp. salmonicida A449, complete genomeAraC family transcriptional regulator6e-0858.2
NC_018720:627642:644875644875645729855Bifidobacterium asteroides PRL2011 chromosome, complete genometranscriptional regulator, AraC family7e-0858.2
NC_020064:2299950:230477223047722305650879Serratia marcescens FGI94, complete genometranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain7e-0858.2
NC_011744:688000:6961536961536971721020Vibrio splendidus LGP32 chromosome 2, complete genomehypothetical protein8e-0857.8
NC_014973:243000:247572247572248330759Geobacter sp. M18 chromosome, complete genometwo component AraC family transcriptional regulator1e-0757
NC_020126:7372685:738728873872887388130843Myxococcus stipitatus DSM 14675, complete genomeAraC family transcriptional regulator1e-0757
NC_010501:3013103:302473330247333025197465Pseudomonas putida W619, complete genometranscriptional regulator, AraC family2e-0756.6
NC_016818:3887000:392219039221903922996807Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeDNA-binding domain-containing protein3e-0756.2
NC_014828:1905479:191609019160901916923834Ethanoligenens harbinense YUAN-3 chromosome, complete genometranscriptional regulator, AraC family4e-0755.5
NC_015723:280368:291558291558292412855Cupriavidus necator N-1 chromosome 2, complete sequenceAraC family transcriptional regulator4e-0755.5
NC_013720:5769910:577557757755775776428852Pirellula staleyi DSM 6068, complete genometranscriptional regulator, AraC family4e-0755.5
NC_014931:2336465:235358923535892354416828Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, AraC family5e-0755.1
NC_014366:1663034:1664567166456716656041038Gamma proteobacterium HdN1, complete genometranscriptional regulator, AraC family6e-0755.1
NC_014008:669170:674515674515675411897Coraliomargarita akajimensis DSM 45221 chromosome, complete genometranscriptional regulator, AraC family6e-0754.7
NC_003485:1707653:1709595170959517108001206Streptococcus pyogenes MGAS8232, complete genomeputative transcriptional regulator6e-0754.7
NC_016609:701500:720386720386721372987Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator7e-0754.7
NC_016935:2069562:209206820920682092916849Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator7e-0754.7
NC_015690:1542061:156474015647401565588849Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator7e-0754.7
NC_014206:3391352:3391352339135233929441593Geobacillus sp. C56-T3 chromosome, complete genomeAraC family transcriptional regulator7e-0754.7
NC_014008:669170:679249679249680019771Coraliomargarita akajimensis DSM 45221 chromosome, complete genometranscriptional regulator, AraC family8e-0754.3
NC_015723:430165:445557445557446420864Cupriavidus necator N-1 chromosome 2, complete sequencetranscriptional regulator1e-0653.5
NC_011000:1216430:123920212392021240122921Burkholderia cenocepacia J2315 chromosome 1, complete sequence2e-0653.5
NC_010625:1513436:153403115340311534858828Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetranscriptional regulator, AraC family2e-0653.1
NC_017068:1852708:185696018569601857808849Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative AraC family transcriptional regulator2e-0653.1
NC_016631:4384251:440042944004294401298870Granulicella mallensis MP5ACTX8 chromosome, complete genomeAraC family transcriptional regulator2e-0653.1
NC_017030:2728175:273281127328112733692882Corallococcus coralloides DSM 2259 chromosome, complete genomeAraC family transcriptional regulator2e-0653.1
NC_009524:861500:861737861737862717981Psychrobacter sp. PRwf-1 chromosome, complete genomeAraC family transcriptional regulator2e-0652.8
NC_012914:970000:9861589861589873871230Paenibacillus sp. JDR-2, complete genometranscriptional regulator, AraC family2e-0652.8
NC_010682:1482365:149686514968651497827963Ralstonia pickettii 12J chromosome 1, complete sequencetranscriptional regulator, AraC family4e-0652