Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:843475 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
8445828460991518lysyl-tRNA synthetaseQuickGO ontologyBLASTP
846356847111756AraC-family transcriptional regulatorQuickGO ontologyBLASTP
847174847857684hypothetical proteinBLASTP
848523849212690hypothetical proteinBLASTP
8492888510091722hypothetical protein
851060851452393hypothetical proteinBLASTP
8515638526331071hypothetical proteinBLASTP
853003853935933lipid A biosynthesis lauroyl acyltransferaseQuickGO ontologyBLASTP
854244854660417hypothetical protein
8548768562311356putative permeaseQuickGO ontologyBLASTP
8566258582711647putative sodiumhydrogen antiporterQuickGO ontologyBLASTP
858630859340711two component system response regulatorQuickGO ontologyBLASTP
8593188608171500two component system sensor kinaseQuickGO ontologyBLASTP
861360861911552hypothetical protein
861960862904945hypothetical proteinBLASTP
8629858644211437hypothetical proteinBLASTP