Pre_GI: BLASTP Hits

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Query: NC_010322:1:422 Pseudomonas putida GB-1 chromosome, complete genome

Start: 422, End: 556, Length: 135

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:8394:881288128946135Pseudomonas putida KT2440, complete genome50S ribosomal protein L341e-1684.7
NC_021150:5298500:532258453225845322718135Azotobacter vinelandii CA6, complete genome50S ribosomal protein L344e-1580.1
NC_012560:5338707:536469253646925364826135Azotobacter vinelandii DJ, complete genomeribosomal protein L344e-1580.1
NC_002516:6255854:626422762642276264361135Pseudomonas aeruginosa PAO1, complete genome50S ribosomal protein L341e-1478.2
NC_014363:2035141:204883120488312048965135Olsenella uli DSM 7084 chromosome, complete genomeLSU ribosomal protein L34P5e-1269.7
NC_009483:5113729:513597851359785136127150Geobacter uraniireducens Rf4 chromosome, complete genome50S ribosomal protein L344e-1166.6
NC_012856:3615550:364757336475733647707135Ralstonia pickettii 12D chromosome 1, complete genomeribosomal protein L341e-1065.5
NC_003295:3688000:486486620135Ralstonia solanacearum GMI1000, complete genome50S ribosomal protein L341e-1065.5
NC_013165:3146000:316339731633973163531135Slackia heliotrinireducens DSM 20476, complete genomeLSU ribosomal protein L34P1e-1065.1
NC_014935:1287494:130903713090371309171135Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeLSU ribosomal protein l34p1e-1065.1
NC_007908:4677856:471193447119344712068135Rhodoferax ferrireducens T118, complete genomeribosomal protein L341e-1065.1
NC_007292:1:146661466614830165Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome50S ribosomal subunit protein L342e-1064.3
NC_020299:764526:809751809751809885135Candidatus Kinetoplastibacterium oncopeltii TCC290E, completelarge subunit ribosomal protein L342e-1064.3
NC_010544:671431:685933685933686067135Candidatus Phytoplasma australiense, complete genomeRibosomal protein L342e-1064.3
NC_008576:4701930:471923447192344719368135Magnetococcus sp. MC-1, complete genomeribosomal protein L346e-1062.8
NC_005303:272915:276574276574276708135Onion yellows phytoplasma OY-M, complete genomeribosomal protein L341e-0962
NC_009076:75535:103241103241103375135Burkholderia pseudomallei 1106a chromosome I, complete sequence50S ribosomal protein L341e-0961.6
NC_006055:769418:792790792790792924135Mesoplasma florum L1, complete genome50S ribosomal protein L342e-0961.2
NC_015696:47484:652116521165345135Francisella sp. TX077308 chromosome, complete genome50S ribosomal protein L34p3e-0960.8
NC_007716:467235:500470500470500604135Aster yellows witches'-broom phytoplasma AYWB, complete genomeLSU ribosomal protein L34P2e-0960.8
NC_007633:988000:100959410095941009728135Mycoplasma capricolum subsp. capricolum ATCC 27343, complete50S ribosomal protein L342e-0960.8
NC_004757:427483:444728444728444862135Nitrosomonas europaea ATCC 19718, complete genomeRibosomal protein L343e-0960.5
NC_015436:1:444444444611168Spirochaeta coccoides DSM 17374 chromosome, complete genome50S ribosomal protein L34P4e-0960.1
NC_008825:4025705:404392340439234044057135Methylibium petroleiphilum PM1, complete genome50S ribosomal protein L347e-0959.3
NC_014759:1999000:201756020175602017721162Marivirga tractuosa DSM 4126 chromosome, complete genomeLSU ribosomal protein l34p9e-0958.9
NC_002932:2142000:328532853446162Chlorobium tepidum TLS, complete genome50S ribosomal protein L341e-0858.5
NC_011047:443475:447703447703447837135Candidatus Phytoplasma mali, complete genome50S ribosomal protein L342e-0858.2
NC_019949:956791:979350979350979496147Mycoplasma cynos C142 complete genome50S ribosomal protein L342e-0858.2
NC_006449:1606948:161878016187801618914135Streptococcus thermophilus CNRZ1066, complete genome50S ribosomal protein L342e-0857.8
NC_006448:1604627:161646816164681616602135Streptococcus thermophilus LMG 18311, complete genome50S ribosomal protein L342e-0857.8
NC_008209:1385094:138670613867061386840135Roseobacter denitrificans OCh 114, complete genomeribosomal protein L343e-0857.4
NC_011060:3000067:301760530176053017766162Pelodictyon phaeoclathratiforme BU-1, complete genomeribosomal protein L343e-0857.4
NC_015875:1926981:194011719401171940251135Streptococcus pseudopneumoniae IS7493 chromosome, complete genomehypothetical protein4e-0857
NC_016826:1783828:178756217875621787696135Streptococcus infantarius subsp. infantarius CJ18 chromosome,50S ribosomal protein L344e-0857
NC_015760:2009425:202238620223862022520135Streptococcus salivarius CCHSS3, complete genomehypothetical protein4e-0857
NC_015914:2230076:223468522346852234843159Cyclobacterium marinum DSM 745 chromosome, complete genome50S ribosomal protein L344e-0856.6
NC_020260:3931567:393589639358963936036141Cronobacter sakazakii Sp291, complete genome50S ribosomal protein L344e-0856.6
NC_004337:3590323:386828338682833868423141Shigella flexneri 2a str. 301, complete genome50S ribosomal protein L344e-0856.6
NC_015968:4790239:481255048125504812690141Enterobacter asburiae LF7a chromosome, complete genome50S ribosomal protein L344e-0856.6
NC_019907:1411124:143329114332911433425135Liberibacter crescens BT-1 chromosome, complete genome50S ribosomal protein L346e-0856.2
NC_015759:760671:780832780832780966135Weissella koreensis KACC 15510 chromosome, complete genome50S ribosomal protein L347e-0855.8
NC_016938:1830500:184559918455991845733135Melissococcus plutonius DAT561 chromosome 1, complete genome50S ribosomal protein L34p1e-0755.5
NC_013192:2434664:246538824653882465525138Leptotrichia buccalis DSM 1135, complete genomeribosomal protein L341e-0755.5
NC_010816:1660066:166775016677501667884135Bifidobacterium longum DJO10A, complete genomeRibosomal protein L342e-0754.7
NC_004307:1620500:162608416260841626218135Bifidobacterium longum NCC2705, complete genome50S ribosomal protein L342e-0754.7
NC_015052:2383865:239986023998602399994135Bifidobacterium longum subsp. infantis 157F, complete genome50S ribosomal protein L342e-0754.7
NC_016001:976556:992884992884993045162Flavobacterium branchiophilum, complete genome50S ribosomal protein L342e-0754.7
NC_015067:2371428:238471223847122384846135Bifidobacterium longum subsp. longum JCM 1217, complete genome50S ribosomal protein L342e-0754.7
NC_017221:2268276:227368922736892273823135Bifidobacterium longum subsp. longum KACC 91563 chromosome,50S ribosomal protein L342e-0754.7
NC_007929:1805000:182649018264901826624135Lactobacillus salivarius subsp. salivarius UCC118, complete genomeLSU ribosomal protein L34P2e-0754.7
NC_014169:2466442:247759524775952477729135Bifidobacterium longum subsp. longum JDM301 chromosome, complete50S ribosomal protein L342e-0754.7
NC_014656:1634397:164208216420821642216135Bifidobacterium longum subsp. longum BBMN68 chromosome, completerpmh2e-0754.7
NC_017219:2815225:282850628285062828640135Bifidobacterium longum subsp. infantis ATCC 15697, complete genome50S ribosomal protein L342e-0754.7
NC_017218:2313245:232711523271152327249135Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genome50S ribosomal protein L342e-0754.3
NC_009616:1604276:161831416183141618448135Thermosipho melanesiensis BI429 chromosome, complete genome50S ribosomal protein L343e-0753.9
NC_003888:4251867:427312742731274273264138Streptomyces coelicolor A3(2), complete genome50S ribosomal protein L343e-0753.9
NC_018720:2138180:216683821668382166972135Bifidobacterium asteroides PRL2011 chromosome, complete genomehypothetical protein with ribosomal protein L34 domain3e-0753.9
NC_007799:392355:418807418807418941135Ehrlichia chaffeensis str. Arkansas, complete genomeribosomal protein L343e-0753.9
NC_019904:2095971:210133721013372101495159Echinicola vietnamensis DSM 17526 chromosome, complete genome50S ribosomal protein L344e-0753.5
NC_006177:3549467:356555735655573565700144Symbiobacterium thermophilum IAM 14863, complete genome50S ribosomal protein L346e-0753.1
NC_017093:8757291:877290087729008773037138Actinoplanes missouriensis 431, complete genomeputative ribosomal protein L345e-0753.1
NC_014616:2172025:218639621863962186530135Bifidobacterium bifidum S17 chromosome, complete genome50S ribosomal protein L344e-0753.1
NC_014638:2199799:221417022141702214304135Bifidobacterium bifidum PRL2010 chromosome, complete genome50S ribosomal protein L344e-0753.1
NC_016935:8716704:873839487383948738528135Paenibacillus mucilaginosus 3016 chromosome, complete genome50S ribosomal protein L347e-0752.8
NC_006085:2544421:256001625600162560150135Propionibacterium acnes KPA171202, complete genome50S ribosomal protein L346e-0752.8
NC_014039:2479500:249508124950812495215135Propionibacterium acnes SK137 chromosome, complete genomeribosomal protein L346e-0752.8
NC_016511:2482500:249837324983732498507135Propionibacterium acnes TypeIA2 P.acn31 chromosome, complete50S ribosomal protein L346e-0752.8
NC_016512:2506898:252249325224932522627135Propionibacterium acnes TypeIA2 P.acn17 chromosome, complete50S ribosomal protein L346e-0752.8
NC_016516:2473500:248923024892302489364135Propionibacterium acnes TypeIA2 P.acn33 chromosome, complete50S ribosomal protein L346e-0752.8
NC_013929:5135285:514220451422045142341138Streptomyces scabiei 87.22 chromosome, complete genome50S ribosomal protein L348e-0752.4
NC_015953:3684065:369340336934033693540138Streptomyces sp. SirexAA-E chromosome, complete genome50S ribosomal protein L349e-0752.4
NC_015564:4727630:473828247382824738425144Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genome50S ribosomal protein L341e-0652
NC_007164:2446879:246164924616492461792144Corynebacterium jeikeium K411, complete genome50S ribosomal protein L341e-0652
NC_007333:3626510:364151236415123641655144Thermobifida fusca YX, complete genome50S ribosomal protein L341e-0651.6
NC_006832:978837:978712978712978846135Ehrlichia ruminantium str. Welgevonden, complete genome50S ribosomal protein L341e-0651.6
NC_005295:998000:999433999433999567135Ehrlichia ruminantium str. Welgevonden, complete genome50S ribosomal protein L341e-0651.6
NC_013521:4240468:425293842529384253087150Sanguibacter keddieii DSM 10542, complete genomeLSU ribosomal protein L34P2e-0651.2
NC_014151:4106624:412256441225644122713150Cellulomonas flavigena DSM 20109 chromosome, complete genomeribosomal protein L342e-0650.8
NC_015389:2101841:211536521153652115499135Coriobacterium glomerans PW2 chromosome, complete genomeLSU ribosomal protein L34P2e-0650.8
NC_014830:4012999:402389340238934024030138Intrasporangium calvum DSM 43043 chromosome, complete genomeLSU ribosomal protein L34P3e-0650.4
NC_013595:10329633:103410161034101610341153138Streptosporangium roseum DSM 43021, complete genome50S ribosomal protein L34P3e-0650.4
NC_010118:133256:154173154173154337165Candidatus Sulcia muelleri GWSS, complete genome50S ribosomal subunit protein L344e-0650.4
NC_008541:4679022:469834846983484698485138Arthrobacter sp. FB24 chromosome 1, complete sequenceribosomal protein L346e-0649.7
NC_008578:2431074:244291524429152443052138Acidothermus cellulolyticus 11B, complete genomeribosomal protein L345e-0649.7
NC_007498:3655304:366548036654803665632153Pelobacter carbinolicus DSM 2380, complete genomeribosomal protein L345e-0649.7
NC_008711:4579997:459708445970844597221138Arthrobacter aurescens TC1, complete genomeribosomal protein L348e-0649.3
NC_011896:3252925:326737832673783267521144Mycobacterium leprae Br4923, complete genome50S ribosomal protein L349e-0648.9
NC_002677:3253057:326751032675103267653144Mycobacterium leprae TN, complete genome50S ribosomal protein L349e-0648.9