Pre_GI: BLASTP Hits

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Query: NC_009800:2995958:3016968 Escherichia coli HS, complete genome

Start: 3016968, End: 3017183, Length: 216

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:906957:921841921841922056216Escherichia coli ATCC 8739, complete genometype III secretion system needle protein2e-34144
NC_013008:3761467:377941037794103779649240Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype III secretion apparatus protein EprI2e-33140
NC_011353:3805819:382468438246843824923240Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus needle protein2e-33140
NC_011751:3285646:330451233045123304751240Escherichia coli UMN026 chromosome, complete genometype III secretion system needle protein2e-33140
NC_002695:3702344:372028737202873720526240Escherichia coli O157:H7 str. Sakai, complete genomeEprI2e-33140
NC_010067:84093:981809818098419240Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-21100
NC_011149:2912219:292460329246032924845243Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus needle protein1e-2098.6
NC_011205:3050235:306046630604663060708243Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus needle protein2e-2097.8
NC_011094:2913500:292328129232812923523243Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus needle protein2e-2097.8
NC_003197:3005842:301607530160753016317243Salmonella typhimurium LT2, complete genomeneedle complex major subunit2e-2097.8
NC_006905:2960260:296960229696022969844243Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein; cytoplasmic2e-2097.8
NC_011080:2982346:299257929925792992821243Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus needle protein2e-2097.8
NC_011083:2980356:299058929905892990831243Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion apparatus needle protein2e-2097.8
NC_011147:2814664:282615728261572826399243Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein2e-2097.8
NC_006511:2819128:283062128306212830863243Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity 1 island effector protein2e-2097.8
NC_011274:2881306:289153928915392891781243Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity 1 island effector protein2e-2097.8
NC_011294:2890500:290073429007342900976243Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity 1 island effector protein2e-2097.8
NC_017046:3027161:303739130373913037633243Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system apparatus2e-2097.8
NC_016863:2974333:298456529845652984807243Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex major subunit2e-2097.8
NC_016860:3029272:303950530395053039747243Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity 1 island effector protein2e-2097.8
NC_016857:3028421:303865130386513038893243Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74needle complex major subunit2e-2097.8
NC_016856:3026426:303631230363123036554243Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex major subunit2e-2097.8
NC_016831:2867766:287799828779982878240243Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity 1 island effector protein2e-2097.8
NC_016810:3028421:303865130386513038893243Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system apparatus2e-2097.8
NC_012125:2938519:294998629499862950228243Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity 1 island effector protein2e-2097.8
NC_015761:2726000:273630427363042736546243Salmonella bongori NCTC 12419, complete genomepathogenicity 1 island effector protein2e-2097.4
NC_016832:2829767:284124528412452841487243Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-2096.7
NC_004631:2842453:285394628539462854188243Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity 1 island effector protein4e-2096.7
NC_003198:2856596:286808928680892868331243Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity 1 island effector protein4e-2096.7
NC_010102:2967464:297905729790572979299243Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-2095.9
NC_013961:851044:860691860691860960270Erwinia amylovora, complete genomeType III secretion system protein PrgI3e-1580.1
NC_013722:1689125:171186217118621712155294Xanthomonas albilineans, complete genomeprobable xanthomonas secretion apparatus protein3e-1477
NC_013971:1660144:167353316735331673805273Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein1e-1375.1
NC_012214:2221702:225498622549862255159174Erwinia pyrifoliae Ep1/96, complete genomeCell invasion protein-cytoplasmic/type III secretion system needle protein7e-1269.3
NC_010694:2138000:216761821676182167824207Erwinia tasmaniensis, complete genomeType III secretion apparatus6e-1166.2
CP002516:903241:918097918097918337241Escherichia coli KO11, complete genome4e-0650.1
CU928160:3030324:304902930490293049184156Escherichia coli IAI1 chromosome, complete genomePutative Type III secretion EprI protein6e-0649.3
NC_011748:3196173:321487832148783215033156Escherichia coli 55989, complete genomePutative Type III secretion EprI protein6e-0649.3
CP002185:3167738:318782431878243187979156Escherichia coli W, complete genome6e-0649.3
CU928145:3196173:321487832148783215033156Escherichia coli 55989 chromosome, complete genomePutative Type III secretion EprI protein6e-0649.3
NC_011741:3030324:304902930490293049184156Escherichia coli IAI1 chromosome, complete genomeputative Type III secretion EprI protein6e-0649.3
NC_013353:3474077:349278134927813492936156Escherichia coli O103:H2 str. 12009, complete genometype III secretion protein EprI6e-0649.3
NC_013361:3867558:388626338862633886418156Escherichia coli O26:H11 str. 11368 chromosome, complete genometype III secretion protein EprI6e-0649.3
NC_013364:3552284:357099535709953571150156Escherichia coli O111:H- str. 11128, complete genome6e-0649.3
AP010958:3474077:349278134927813492936156Escherichia coli O103:H2 str. 12009 DNA, complete genometype III secretion protein EprI6e-0649.3