Pre_GI: BLASTP Hits

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Query: NC_009727:1001203:1001203 Coxiella burnetii Dugway 7E9-12, complete genome

Start: 1001203, End: 1002594, Length: 1392

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii Dugway 5J108-111 was isolated from rodents in Utah, USA. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002971:951102:9706179706179720081392Coxiella burnetii RSA 493, complete genomehypothetical protein0848
NC_011527:953442:9558659558659572561392Coxiella burnetii CbuG_Q212, complete genomeATPase0845
NC_011528:767940:7679407679407690281089Coxiella burnetii CbuK_Q154, complete genomeATPase0641
NC_013956:595320:5973855973855988871503Pantoea ananatis LMG 20103 chromosome, complete genomeYjgR3e-126452
NC_010694:436500:4390204390204405191500Erwinia tasmaniensis, complete genomeConserved hypothetical protein YjgR4e-126451
NC_016816:3974895:3995402399540239969041503Pantoea ananatis LMG 5342, complete genomeATPase7e-126451
NC_019903:134169:1381801381801396881509Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ATPase4e-124445
NC_013716:3512950:3514145351414535156471503Citrobacter rodentium ICC168, complete genomehypothetical protein1e-121436
NC_008752:3511006:3532402353240235339251524Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function DUF853, NPT hydrolase putative3e-121435
NC_020063:4127161:4144584414458441460861503Enterobacteriaceae bacterium strain FGI 57, complete genomeputative ATPase6e-121434
NC_010067:3056774:3080218308021830817201503Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-119430
NC_011415:4767892:4767892476789247693941503Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-119429
NC_007613:4217557:4230256423025642317581503Shigella boydii Sb227, complete genomehypothetical protein2e-119429
NC_012967:4449576:4471788447178844732901503Escherichia coli B str. REL606 chromosome, complete genomeputative ATPase2e-119429
AC_000091:4472000:4493241449324144947431503Escherichia coli W3110 DNA, complete genomepredicted ATPase2e-119429
NC_010498:4821519:4843468484346848449701503Escherichia coli SMS-3-5, complete genomehypothetical protein4e-119428
CP002797:4603787:4605030460503046065321503Escherichia coli NA114, complete genomeHypothetical protein1e-118427
NC_010524:2117347:2117347211734721189241578Leptothrix cholodnii SP-6, complete genomeprotein of unknown function DUF853 NPT hydrolase putative1e-118427
NC_011742:4795733:4817932481793248194341503Escherichia coli S88 chromosome, complete genomeATPase9e-119427
NC_004337:4374500:4397528439752843990781551Shigella flexneri 2a str. 301, complete genomehypothetical protein8e-119427
NC_017328:4417000:4441239444123944427891551Shigella flexneri 2002017 chromosome, complete genomehypothetical protein8e-119427
CU928160:4570498:4572799457279945743011503Escherichia coli IAI1 chromosome, complete genomeputative ATPase1e-118426
NC_011741:4570498:4572799457279945743011503Escherichia coli IAI1 chromosome, complete genomeputative ATPase1e-118426
NC_013941:5192500:5192653519265351941551503Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-118426
NC_008258:4345400:4366158436615843676601503Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-118426
NC_008563:4905186:4905186490518649067151530Escherichia coli APEC O1, complete genomepredicted ATPase4e-118425
NC_013971:3296272:3326792332679233282911500Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein1e-117424
NC_013961:441719:4429984429984444971500Erwinia amylovora, complete genomeUncharacterized protein yjgR1e-117424
NC_015731:3180194:3181601318160131831211521Nitrosomonas sp. Is79A3 chromosome, complete genomehypothetical protein1e-116420
NC_007759:2146254:2163581216358121650711491Syntrophus aciditrophicus SB, complete genomeATPase5e-116418
NC_012004:470492:4894734894734909721500Streptococcus uberis 0140J, complete genomehypothetical protein4e-114412
NC_003911:2042389:2061709206170920632621554Silicibacter pomeroyi DSS-3, complete genomehypothetical protein2e-113409
NC_013165:2440883:2459707245970724613411635Slackia heliotrinireducens DSM 20476, complete genomepredicted ATPase2e-111403
NC_011985:2902000:2912648291264829142491602Agrobacterium radiobacter K84 chromosome 1, complete genomeATP-binding protein5e-92338
NC_019673:1275627:1301285130128513027991515Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-84312
NC_014318:7821227:7825402782540278269281527Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein7e-81301
NC_017186:7822448:7825448782544878269741527Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein7e-81301
NC_017955:693303:7178237178237194331611Modestobacter marinus, complete genomeATPase3e-79296
NC_013235:1938889:1958413195841319600801668Nakamurella multipartita DSM 44233, complete genomeprotein of unknown function DUF853 NPT hydrolase putative1e-75284
NC_009077:3851203:3852116385211638536871572Mycobacterium sp. JLS, complete genomeprotein of unknown function DUF853, NPT hydrolase putative6e-75281
NC_014168:709036:7116137116137131931581Segniliparus rotundus DSM 44985 chromosome, complete genomehypothetical protein4e-69262