Pre_GI: BLASTP Hits

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Query: NC_009512:1518113:1546509 Pseudomonas putida F1, complete genome

Start: 1546509, End: 1547810, Length: 1302

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:4515853:4520428452042845217201293Pseudomonas syringae pv. syringae B728a, complete genomeMscS Mechanosensitive ion channel3e-173608
NC_004578:1719849:1734733173473317360431311Pseudomonas syringae pv. tomato str. DC3000, complete genomemechanosensitive ion channel family protein5e-173607
NC_020063:3352516:3362711336271133639581248Enterobacteriaceae bacterium strain FGI 57, complete genomesmall-conductance mechanosensitive channel3e-87322
NC_016612:2902628:2920103292010329213471245Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative transport4e-86318
NC_014633:339181:3391813391813404401260Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencemechanosensitive ion channel MscS1e-84314
NC_002505:238569:2706972706972719351239Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein1e-84313
NC_009457:2764972:2795831279583127970691239Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein1e-84313
NC_012578:224559:2554242554242566621239Vibrio cholerae M66-2 chromosome I, complete sequencehypothetical protein1e-84313
NC_012582:272320:3031793031793044171239Vibrio cholerae O395 chromosome chromosome I, complete sequencehypothetical protein1e-84313
NC_012668:368305:3683053683053695431239Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein1e-84313
NC_016445:2663837:2694704269470426959421239Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein1e-84313
NC_016944:238580:2707082707082719461239Vibrio cholerae IEC224 chromosome I, complete sequencehypothetical protein1e-84313
NC_015633:461143:4826344826344838691236Vibrio anguillarum 775 chromosome chromosome I, complete sequencemechanosensitive ion channel5e-83308
NC_011083:654479:6740656740656753121248Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transporter, small conductance mechanosensitive ion channel1e-82307
NC_016856:606742:6263296263296275761248Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-82307
NC_016863:606742:6263286263286275751248Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein1e-82307
NC_011149:588895:6085246085246097711248Salmonella enterica subsp. enterica serovar Agona str. SL483,transporter, small conductance mechanosensitive ion channel1e-82307
NC_003198:598000:6172636172636185101248Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-82307
NC_011205:645591:6706376706376718841248Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853small conductance mechanosensitive ion channel transporter1e-82307
NC_015761:520858:5402615402615415081248Salmonella bongori NCTC 12419, complete genomehypothetical protein8e-83307
NC_012214:1355500:1358722135872213599661245Erwinia pyrifoliae Ep1/96, complete genomeSmall-conductance mechanosensitive channel8e-83307
NC_011080:610428:6300426300426312891248Salmonella enterica subsp. enterica serovar Newport str. SL254,transporter, small conductance mechanosensitive ion channel3e-82306
NC_006905:651732:6757876757876770341248Salmonella enterica subsp. enterica serovar Choleraesuis strputative transport3e-82306
NC_010694:1250841:1255134125513412563781245Erwinia tasmaniensis, complete genomeSmall-conductance mechanosensitive channel5e-82305
NC_009436:1141376:1165396116539611666401245Enterobacter sp. 638, complete genomeMscS mechanosensitive ion channel4e-82305
NC_015172:1195782:1194533119453311957891257Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeMscS Mechanosensitive ion channel6e-81301
NC_016845:1407339:1423272142327214245161245Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative transport5e-80298
NC_016745:123772:1354681354681367601293Oceanimonas sp. GK1 chromosome, complete genomemechanosensitive ion channel protein MscS3e-79296
NC_006138:225832:2264262264262276761251Desulfotalea psychrophila LSv54, complete genomehypothetical protein9e-77287
NC_009348:3819271:3837685383768538389351251Aeromonas salmonicida subsp. salmonicida A449, complete genomemechanosensitive ion channel3e-75282
NC_008570:4009762:4025707402570740269481242Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomemechanosensitive ion channel2e-73276
NC_013222:1659619:1662288166228816635411254Robiginitalea biformata HTCC2501, complete genomeputative membrane transport protein4e-70265
NC_016001:1893685:1912584191258419138371254Flavobacterium branchiophilum, complete genomeputative small-conductance mechanosensitive ion channel MscS24e-65249
NC_015496:1590674:1608080160808016093571278Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeMscS Mechanosensitive ion channel7e-64244
NC_004663:1983439:1998220199822019993951176Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein4e-58225
NC_003228:3582728:3583747358374735849161170Bacteroides fragilis NCTC 9343, complete genomehypothetical protein4e-54212
NC_016776:3626541:3629214362921436303831170Bacteroides fragilis 638R, complete genomehypothetical protein4e-54212
NC_007005:4515853:453285545328554533283429Pseudomonas syringae pv. syringae B728a, complete genome4e-49196
NC_009512:1518113:152455615245561524735180Pseudomonas putida F1, complete genome4e-26119
NC_014935:711765:7370107370107382781269Nitratifractor saLSUginis DSM 16511 chromosome, complete genomemscs mechanosensitive ion channel3e-0963.2
NC_011333:1040192:1043492104349210453751884Helicobacter pylori G27 chromosome, complete genomehypothetical protein3e-0860.5